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* expanded tests a bit
* whitespace as seps and stdin for cmdtool
* changed to sets
* fixed core raf, started with set implementation, made minor changes
* further refactoring, added graphML support
* some refactoring and docstrings
* made central class
* reformatting, START OF REFACTORING
* As Far as i can tell all main features are done
* started graphIO
* line parser, minor fixes, progBars
* Added the polymertool and some starting progressbars also fixed tons of small bugs
* added rest of algos
* ModelIO is working and commandlinetool works on a basic level
* continued testing
* debugged Moleculetype and Reaction and added testing
* added MinIRAFHeuristic, ModelIO, ReactionNotation and started on ArrowNotation
* removed unneccesary files and made a basic version of commandtool
* some small corrections and some more algo work
* continued work on Algorithms
* started on adding utilities started some stuff missed on reaction
* reactionSystem done
* finished Reactionsystem class except for hash functions and copies
* finished reaction and dnf classes
* in the process of debugging
* some minor changes
* fixed the early cutoff issue
* moved everything one level up, almost finished dnf
* finished reaction,py, started on disjunctiveNormalForm.py, started issues.txt file
* finished parse, made placeholder dnf class
* mostly parse fkt in reaaction
* Ini Commit
* Initial commit