Cayenne

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Added
+++++
- ``Results.get_states`` method - returns state at time ``t``
- Accuracy tests for all algorithms
- Additional consistency checks for ``X0`` and ``k_det``

Changed
+++++++
- Refactor algorithms into sub module ``algorithms``
- Refactor algorithm independent tests

Fixed
+++++
- Indexing issue in propensity calculation in ``direct`` algorithm
- Indexing issue in propensity calculation in ``tau_leaping`` algorithm
- Address edge case X->2X in ``tau_adaptive`` algorithm

------------------

Changed
+++++++
- Refactor ``tau_adaptive``
- Rename ``direct_naive`` to ``direct``

Fixed
+++++
- SSA part of ``tau_adaptive``
- Bug in linux compatibility of ``tau_adaptive``

------------------

Added
+++++
- Support for the ``tau_adaptive`` algorithm
- Support for multiprocessing

Fixed
+++++
- Transpose stoichiometric matrix
- Update references in docstrings

Changed
+++++++
- Use ``TINY`` and ``HIGH`` for status estimation
- Use ``np.int64`` and ``np.float64`` explicitly

Chore
+++++
- Update dependencies
- Add azure pipelines for testing on Windows

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Added
+++++
- Updated ``direct_naive`` docstring
- Support for the ``tau_leaping`` algorithm
- Species name support for plotting

Fixed
+++++
- Check for sum propensities uses threshold instead of equality
- Add check for type of ``max_iter``

Changed
+++++++
- Update ``roulette_selection`` to use `np.searchsorted`
- Minor changes to ``numpy`` style usage

Chore
+++++
- Add ``codecov``
- Travis pypi autodepolyment
- Parameterize tests with algorithm name
- Add details about ``tau_leaping`` to docs and README

------------------

Added
+++++
- badge to readme

------------------

Added
+++++
- plot to pypi

Changed
+++++++
- fix bumpversion/black issue
- remove history from package long_description