Cellfinder-core

Latest version: v1.0.0

Safety actively analyzes 688323 Python packages for vulnerabilities to keep your Python projects secure.

Scan your dependencies

0.5.0

Changes
- `cellfinder-core` cannot be imported without `tensorflow` present, [186](https://github.com/brainglobe/cellfinder-core/pull/186). This is in [light of a bug](https://github.com/conda-forge/cellfinder-core-feedstock/issues/13) with the `conda-forge` `cellfinder-core` package and the `tensorflow` dependency being unavailable through these channels. As a compromise, `cellfinder-core` [can still be installed from `conda-forge`](https://github.com/conda-forge/cellfinder-core-feedstock/pull/14), however Windows users will have to manually install `tensorflow` into their environment themselves.
- The `imlib` library has been retired, [182](https://github.com/brainglobe/cellfinder-core/pull/182). We now [depend on `brainglobe-utils`](https://github.com/brainglobe/brainglobe-utils), a library of functions used across a number of [BrainGlobe](https://brainglobe.info/) tools.

Developer changes
- `mypy` has been updated to avoid errors whilst type checking, [180](https://github.com/brainglobe/cellfinder-core/pull/180).
- Typehints have been added to `cellfinder-core.classificataion`, [181](https://github.com/brainglobe/cellfinder-core/pull/181).

0.4.0

Changed
- The cell detection code has been re-written to use [numba](https://numba.readthedocs.io/en/stable/) instead of Cython. This means we no longer have to pre-compile the cell detection code when making a new release of `cellfinder-core`, but does mean `numba` is now a dependency that users have to have installed. The cell detection algorithm remains the same, and perfomance has been tested to make sure it is as fast after this change.

0.3.0

Added
- Re-worked the way processes are created during the detection stage to remove
~20 seconds of overhead when running cell detection.
- Support for Python 3.10.

Removed
- Support for Python 3.7.

Bug fixes
- Fixed macOS issues where cellfinder could hang during the detection stage.

Links

Releases

Has known vulnerabilities

© 2024 Safety CLI Cybersecurity Inc. All Rights Reserved.