Cellpose

Latest version: v3.1.0

Safety actively analyzes 688600 Python packages for vulnerabilities to keep your Python projects secure.

Scan your dependencies

Page 2 of 4

2.2.1

* fixing deprecation of `np.bool`
* mrariden improved docs, added auto compilation of CLI page
* FrickTobias fixed a bug for memory info (647 )
* fixed version checking for torch 2.0 release

2.1.1

Implementing some minor fixes and updates
* cellpose passes tests for python 3.9 and 3.10 across operating systems -- we still recommend python 3.8, particularly if you have issues with the install
* added option to use Mac M1 chip (if installed with torch) with command line argument `--gpu device mps`
* added option to run cellpose on a single file from the command like with `--image_path` as an alternative to `--dir` (543)
* added new suggestion mode to suggest best Cellpose 2 model
* suppressed writing PNGs or outlines when no masks were found (584)
* added docs for all functions (554)
* fixed case sensitive image file detection (555)
* allow `eval` method of `Cellpose` and `CellposeModel` to take as input torch arrays (557)
* added the function `io.add_model(/full/path/to/model)` to add the model file to the hidden folder to use with GUI and CLI; can also access the function by running `python -m cellpose --add_model /full/path/to/model` (558)
* fixed issue with cursor not allowing resizing (545 )
* added mac instructions (523)
* forced tiff saving for masks > 2**16 (524)
* added pyqt5 import statement for windows 8.1 compatibility

2.0.5

2.0.4

2.0

pip install cellpose --upgrade


Check out the twitter [thread](https://twitter.com/marius10p/status/1511415409047650307?s=20&t=umTVIG1CFKIWHYMrQqFKyQ) and [preprint](https://www.biorxiv.org/content/10.1101/2022.04.01.486764v1) for details.

Read how to use human-in-the-loop yourself in the [gui docs](https://cellpose.readthedocs.io/en/latest/gui.html#training-your-own-cellpose-model), and check out the full human-in-the-loop [video](https://youtu.be/3Y1VKcxjNy4).

Also, read more about the model zoo and how to use user-trained models in the [models docs](https://cellpose.readthedocs.io/en/latest/models.html).

1.0.2

Page 2 of 4

© 2024 Safety CLI Cybersecurity Inc. All Rights Reserved.