Cellxgene-census

Update to latest SOMA API, v0.5.0a8, including on-disk format change from TileDB v2.14. Includes breaking API changes from 0.2.0.

What's Changed
* update to tilebsoma 0.5.0a4 by atolopko-czi in https://github.com/chanzuckerberg/cell-census/pull/77
* update to tiledbsoma 0.5.0a6 by atolopko-czi in https://github.com/chanzuckerberg/cell-census/pull/82
* re-run comp_bio_explore_and_load_lung_data notebook by atolopko-czi in https://github.com/chanzuckerberg/cell-census/pull/83
* builder fixes by atolopko-czi in https://github.com/chanzuckerberg/cell-census/pull/84
* fix notebook import by atolopko-czi in https://github.com/chanzuckerberg/cell-census/pull/90
* Improve notebook `comp_bio_explore_and_load_lung_data.ipynb` by pablo-gar in https://github.com/chanzuckerberg/cell-census/pull/91
* Improve notebook `comp_bio_data_integration_scvi.ipynb` by pablo-gar in https://github.com/chanzuckerberg/cell-census/pull/92
* tiledb version dependency fixes by atolopko-czi in https://github.com/chanzuckerberg/cell-census/pull/95
* prep for 0.3.0 release by bkmartinjr in https://github.com/chanzuckerberg/cell-census/pull/96


**Full Changelog**: https://github.com/chanzuckerberg/cell-census/compare/v0.2.0...v0.3.0

Support v0.2.0 of the Cell Census schema, which moves the location of the dataset presence matrix.

What's Changed
* feat: builder schema changes by atolopko-czi in https://github.com/chanzuckerberg/cell-census/pull/66
* presence matrix location change in schema 0.2.0 by bkmartinjr in https://github.com/chanzuckerberg/cell-census/pull/70
* fix cmd line example for builder by atolopko-czi in https://github.com/chanzuckerberg/cell-census/pull/68
* docs: schema update presence matrix by pablo-gar in https://github.com/chanzuckerberg/cell-census/pull/69
* atol/bump builder census schema version by atolopko-czi in https://github.com/chanzuckerberg/cell-census/pull/71


**Full Changelog**: https://github.com/chanzuckerberg/cell-census/compare/v0.1.0...v0.2.0

What's Changed
* refinement of release process doc by bkmartinjr in https://github.com/chanzuckerberg/cell-census/pull/51
* docs: Add comp bio notebooks by pablo-gar in https://github.com/chanzuckerberg/cell-census/pull/45
* simplify get_anndata API by bkmartinjr in https://github.com/chanzuckerberg/cell-census/pull/52
* docs: add integration notebook by pablo-gar in https://github.com/chanzuckerberg/cell-census/pull/53
* docs: separates demonstration notebooks into two different folders by pablo-gar in https://github.com/chanzuckerberg/cell-census/pull/54
* docs: add notebook to explain value_filter and column_selection by pablo-gar in https://github.com/chanzuckerberg/cell-census/pull/55
* docs: update link to Discover API schema docs by atolopko-czi in https://github.com/chanzuckerberg/cell-census/pull/58
* issue: 64 by atolopko-czi in https://github.com/chanzuckerberg/cell-census/pull/65
* update cell_census package to use SOMA API 0.5.0a3 by bkmartinjr in https://github.com/chanzuckerberg/cell-census/pull/63


**Full Changelog**: https://github.com/chanzuckerberg/cell-census/compare/v0.0.1...v0.1.0

Initial release.

What's Changed
* Preparations for making repo public by bkmartinjr in https://github.com/chanzuckerberg/cell-census/pull/1
* initial commit of migrated source by bkmartinjr in https://github.com/chanzuckerberg/cell-census/pull/2
* specification update wrt multi-species genes by bkmartinjr in https://github.com/chanzuckerberg/cell-census/pull/19
* miscellaneous small fixes by bkmartinjr in https://github.com/chanzuckerberg/cell-census/pull/27
* docs: add comp bio to notebook to learn about the census by pablo-gar in https://github.com/chanzuckerberg/cell-census/pull/29
* fix query builder by bkmartinjr in https://github.com/chanzuckerberg/cell-census/pull/33
* Add: schema doc and storage/release doc by pablo-gar in https://github.com/chanzuckerberg/cell-census/pull/24
* schema performance tuning by bkmartinjr in https://github.com/chanzuckerberg/cell-census/pull/28
* add get_experiment and get_presence_matrix by bkmartinjr in https://github.com/chanzuckerberg/cell-census/pull/40
* Add unit tests by bkmartinjr in https://github.com/chanzuckerberg/cell-census/pull/38
* doc typos & builder param tips by atolopko-czi in https://github.com/chanzuckerberg/cell-census/pull/42
* accommodate SOMA API name changes by bkmartinjr in https://github.com/chanzuckerberg/cell-census/pull/47
* build/packaging by bkmartinjr in https://github.com/chanzuckerberg/cell-census/pull/41
* Refine unit test workflows by bkmartinjr in https://github.com/chanzuckerberg/cell-census/pull/49
* Build and release refinement by bkmartinjr in https://github.com/chanzuckerberg/cell-census/pull/50

New Contributors
* bkmartinjr made their first contribution in https://github.com/chanzuckerberg/cell-census/pull/1
* pablo-gar made their first contribution in https://github.com/chanzuckerberg/cell-census/pull/29

**Full Changelog**: https://github.com/chanzuckerberg/cell-census/commits/v0.0.1