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0.2.1

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DefineClones:

+ Removed mouse 3-mer model, 'm3n'.

0.2.0

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Initial public prerelease.

Output files were added to the usage documentation of all scripts.

General code cleanup.

DbCore:

+ Updated loading of database files to convert column names to uppercase.

AnalyzeAa:

+ Fixed a bug where junctions less than one codon long would lead to a
division by zero error.
+ Added ``--failed`` flag to create database with records that fail analysis.
+ Added ``--sf`` flag to specify sequence field to be analyzed.

CreateGermlines:

+ Fixed a bug where germline sequences could not be created for light chains.

DefineClones:

+ Added a human 1-mer model, 'hs1f', which uses the substitution rates from
from Yaari et al, 2013.
+ Changed default model to 'hs1f' and default normalization to length for
bygroup subcommand.
+ Added ``--link`` argument which allows for specification of single, complete,
or average linkage during clonal clustering (default single).

GapRecords:

+ Fixed a bug wherein non-standard sequence fields could not be aligned.

MakeDb:

+ Fixed bug where the allele 'TRGVA*01' was not recognized as a valid allele.

ParseDb:

+ Added rename subcommand to ParseDb which renames fields.

0.2.0.beta20150531

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Minor changes to a few output file names and log field entries.

ParseDb:

+ Added index subcommand to ParseDb which adds a numeric index field.

0.2.0.beta20150505

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Prerelease for review.

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