Chewbbaca

Latest version: v3.3.10

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2.0.11

- Corrected bug when `-h` parameter was provided for allele call.
- New option for the schema creation. A schema can be created based on a single fasta file, skipping the gene prediction step. Use `--CDS` and provide a single FASTA file to the `-i` parameter.

2.0.10

- cgMLST profile extraction function (ExtractCgMLST) more efficient (thanks Dillon Barker).
- New option for the allele call, size threshold previously hardcoded at 0.2 can now be changed using the `--st` option. Size threshold is important for the definition of ASM and ALM (alleles smaller/larger than mode).

2.0.9

- Blast results during allele call are not saved as a file, instead are piped directly for processing.
- New option for the allele call, if genome fasta input is already a fasta of CDS use the `--CDS` option.

2.0.7

- Corrected bug that prevented usage of latest blast version (>=2.7.0).
- Version flag can now be used `--version`.
- Instead of calling the main script `chewBBACA.py` you can now use `chewie` (if installed trought pip).

2.0.5

- AlleleCall: `-i` parameter accepts a single fasta file now.

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