Cleanx

Commits
- a9bc057: fix readme (Candace Makeda Moore, MD)
- 3dbee6a: another cosmetic readme change (Candace Makeda Moore, MD)
- 787ca99: readme (Candace Makeda Moore, MD)
- 3b1a1a0: updating readme (Candace Makeda Moore, MD)
- be39c7f: readmefixes badges (Candace Makeda Moore, MD)
- f2cfbb5: binder changes (Candace Makeda Moore, MD)
- 51006ec: update binder notebook (Candace Makeda Moore, MD)
- d05dd6e: more binder updates (Candace Makeda Moore, MD)
- 9d39716: Add code and CI job to generate conda environment files (Oleg Sivokon)
- 4b70a9a: Reduce verbosity in conda installs (Oleg Sivokon)
- 0101040: [fix] Windows slashes in path (Oleg Sivokon)
- b9f3375: Add Developer's Guide (Oleg Sivokon)
- 9e29304: Add medical professional docs to the rest of the docs (Oleg Sivokon)

Commits
- 3e2bebe: [fix] Added the fix for missing old Tesseract (Oleg Sivokon)
- 895493c: Renamed LICENSE_copy to LICENSE (Oleg Sivokon)
- abeda6e: [fix] subprocess throws different errors if it cannot find an executable (Oleg Sivokon)
- 83062bc: for improved workbook (Candace Makeda Moore, MD)
- 3554267: fix duplicates notebook (Candace Makeda Moore, MD)
- 3cf82a4: Split CLI code into submodules (Oleg Sivokon)
- 92d7381: Add rip_out_jpgs to DICOM readers (Oleg Sivokon)
- 2b3bfc5: Add test for image extraction, closes 40 (Oleg Sivokon)
- bc59336: [fix] PEP8 (Oleg Sivokon)
- 93cca3e: Update README to reflect the CLI changes (Oleg Sivokon)
- bcbd6cb: Split show_images_in_df into two functions (Oleg Sivokon)
- 04c938a: Add test for find_close_images (Oleg Sivokon)
- f6a28fd: [fix] Try to do shell expansion. May be helpful on Windows (Oleg Sivokon)
- 7143d8f: intermittant changes (Candace Makeda Moore, MD)
- d0180da: update notebooks1 (Candace Makeda Moore, MD)
- 88bd2d4: futher update notebooks (Candace Makeda Moore, MD)

Commits
- 100c0b5: text formatting (Candace Makeda Moore, MD)
- a59ca86: workflow repair (Candace Makeda Moore, MD)
- c0eac3f: fix azure? (Candace Makeda Moore, MD)
- 80e05f1: more comments (Candace Makeda Moore, MD)
- 22278e1: Initial work on matrix builds (only for Linux so far) (Oleg Sivokon)
- bbc94f3: [fix] Specifying conda environment (Oleg Sivokon)
- 3833a05: linting (Candace Makeda Moore, MD)
- faf83b7: more documentation (Candace Makeda Moore, MD)
- 7bd071d: pull out garbage (Candace Makeda Moore, MD)
- 3ebdabe: [fix] Linting and parents counting (Oleg Sivokon)
- a6f5c48: clean workflow folder (Candace Makeda Moore, MD)
- d604b52: Build conda packages on all supported systems (Oleg Sivokon) [20](https://github.com/drcandacemakedamoore/cleanX/pull/20)
- 6f14e87: Try another Windows shell syntax... (Oleg Sivokon) [20](https://github.com/drcandacemakedamoore/cleanX/pull/20)
- 58887ae: [fix] Prevent from installing new OpenCV, as it's broken on Macs (Oleg Sivokon) [20](https://github.com/drcandacemakedamoore/cleanX/pull/20)
- 9af076d: [fix] Seems like we didn't go back far enough (Oleg Sivokon) [20](https://github.com/drcandacemakedamoore/cleanX/pull/20)
- e99c449: [fix] Try to exclude Mac and Linux builds for Python 3.9 (Oleg Sivokon) [20](https://github.com/drcandacemakedamoore/cleanX/pull/20)
- f0449e2: Add some debugging info for conda forge (Oleg Sivokon) [20](https://github.com/drcandacemakedamoore/cleanX/pull/20)
- 536b688: [fix] conda list should be in the right environment (Oleg Sivokon) [20](https://github.com/drcandacemakedamoore/cleanX/pull/20)
- 375028c: Let's try w/o anaconda channel (Oleg Sivokon) [20](https://github.com/drcandacemakedamoore/cleanX/pull/20)
- d80726b: Try running releases in parallel collecting artifacts (Oleg Sivokon) [20](https://github.com/drcandacemakedamoore/cleanX/pull/20)
- 3ec7ec6: Run sanity with multiple extra dependencies (Oleg Sivokon) [22](https://github.com/drcandacemakedamoore/cleanX/pull/22)
- 1ab1d32: [fix] CLI tests should use sys.executable instead of python (Oleg Sivokon) [22](https://github.com/drcandacemakedamoore/cleanX/pull/22)
- 498daf6: [fix] PyPI version of pandas needs, but doesn't install pytz (Oleg Sivokon) [22](https://github.com/drcandacemakedamoore/cleanX/pull/22)
- c9c287c: [fix] Always upload artifacts (Oleg Sivokon) [22](https://github.com/drcandacemakedamoore/cleanX/pull/22)
- ef59e9d: [fix] Apparently, if you tell easy_install to install it will (Oleg Sivokon) [22](https://github.com/drcandacemakedamoore/cleanX/pull/22)
- 190ac41: Initial image processing pipeline code (Oleg Sivokon) [23](https://github.com/drcandacemakedamoore/cleanX/pull/23)
- 6d9de95: [fix] incorrect batching in pipeline (Oleg Sivokon) [23](https://github.com/drcandacemakedamoore/cleanX/pull/23)
- 1726df8: [fix] Apparently os.sched_getaffinity() is platform-dependent (Oleg Sivokon) [23](https://github.com/drcandacemakedamoore/cleanX/pull/23)
- 1806d67: [fix] Hopefully this will fix multiprocessing issues (Oleg Sivokon) [23](https://github.com/drcandacemakedamoore/cleanX/pull/23)
- 065c13e: rename,workflow,pipeline (Candace Makeda Moore, MD) [23](https://github.com/drcandacemakedamoore/cleanX/pull/23)
- d4e4f5b: clean testing (Candace Makeda Moore, MD) [23](https://github.com/drcandacemakedamoore/cleanX/pull/23)
- 73ff6fc: classy workflow (Candace Makeda Moore, MD) [23](https://github.com/drcandacemakedamoore/cleanX/pull/23)
- aafc132: fixed function and test (Candace Makeda Moore, MD) [23](https://github.com/drcandacemakedamoore/cleanX/pull/23)
- 3644d4a: fix minor lint (Candace Makeda Moore, MD) [23](https://github.com/drcandacemakedamoore/cleanX/pull/23)
- 21c2725: histogram normalize class (Candace Makeda Moore, MD)
- 136ecee: lint new class (Candace Makeda Moore, MD)
- 95caf1f: dataframes documentation (Candace Makeda Moore, MD)
- a0043d3: lint problem (Candace Makeda Moore, MD)
- 2a34c51: massive lint issue (Candace Makeda Moore, MD)
- 092b5b7: parenthesis lint (Candace Makeda Moore, MD)
- d1bd90d: Add documentation to pipeline classes (Oleg Sivokon)

Commits
- 41d7d13: cleaning dicom dictionary (Candace Makeda Moore, MD)
- 3acb63e: update paper title (Candace Makeda Moore, MD)
- 41776cc: new names for pre-class (Candace Makeda Moore, MD)
- 5593742: [fix] The bdist_wheel build used to throw away the contents of the package (Oleg Sivokon)
- 8c5a030: [fix] lint (Candace Makeda Moore, MD)
- ac20785: lint again (Candace Makeda Moore, MD)
- 7a80f60: worflow update (Candace Makeda Moore, MD)
- 55d9553: classes for dataframes (Candace Makeda Moore, MD)
- f8833d0: linting new branch (Candace Makeda Moore, MD)
- 8a223d3: relinting new branch (Candace Makeda Moore, MD)
- 2e9a3f3: Sources for data import (Oleg Sivokon)
- 1884fb0: class to see data (Candace Makeda Moore, MD)
- 5beca66: [fix] PEP8 (Oleg Sivokon)
- 70f136e: more classes (Candace Makeda Moore, MD)
- 61bc323: adding classes (Candace Makeda Moore, MD)
- c7ce1cf: relinting again (Candace Makeda Moore, MD)
- 00a089a: double relint (Candace Makeda Moore, MD)
- c24d309: third lint (Candace Makeda Moore, MD)
- e2821ea: Example of generating report with output as Jupyter widget (Oleg Sivokon)
- dc3c791: classless workflow (Candace Makeda Moore, MD)
- 86e720e: start classy workflow demo (Candace Makeda Moore, MD)
- b461919: fix NAN counting (Candace Makeda Moore, MD)
- fe9a999: classes fix (Candace Makeda Moore, MD)
- 4a77c19: linting (Candace Makeda Moore, MD)
- 5b19f3c: relint (Candace Makeda Moore, MD)
- c72848f: add text output (Candace Makeda Moore, MD)
- 252c308: linting text function (Candace Makeda Moore, MD)
- 634df1b: workflow (Candace Makeda Moore, MD)
- 06b7d97: class workflow (Candace Makeda Moore, MD)
- b0e8a73: readme update (Candace Makeda Moore, MD)
- e985910: [wip] Command-line interface to cleanX (Oleg Sivokon) [18](https://github.com/drcandacemakedamoore/cleanX/pull/18)
- 3b86604: Added a simple test for CLI DICOM reader (Oleg Sivokon) [18](https://github.com/drcandacemakedamoore/cleanX/pull/18)
- e4a82f4: [fix] PEP8 (Oleg Sivokon) [18](https://github.com/drcandacemakedamoore/cleanX/pull/18)
- dce86de: [fix] Missing cli package from requirements (Oleg Sivokon) [18](https://github.com/drcandacemakedamoore/cleanX/pull/18)
- 1a039ae: Add optional dependencies in setup.py (Oleg Sivokon) [18](https://github.com/drcandacemakedamoore/cleanX/pull/18)
- 13ee89d: Added CLI for datasets processing (Oleg Sivokon) [18](https://github.com/drcandacemakedamoore/cleanX/pull/18)
- 9434dc3: Add a test for datasets CLI (Oleg Sivokon) [18](https://github.com/drcandacemakedamoore/cleanX/pull/18)

Commits
- 9de4575: dicom explain link (Candace Makeda Moore, MD)
- 7805840: more readme (Candace Makeda Moore, MD)