Clophfit

Fix

- (342)
- pd.Index generic (341)
- Refactor to accommodate ruff update to 0.0.280

Docs

- Add pdf to RtD
- Add all formats to RtD

Build

- bump pandas-stubs from 2.0.2.230605 to 2.0.3.230814
- bump pandas-stubs from 2.0.2.230605 to 2.0.3.230814
- update coverage[toml] requirement from <7.2.8 to <7.3.1 (340)
- update mypy requirement from <1.5 to <1.6 (339)
- update tqdm requirement from <4.65.3 to <4.66.2 (338)
- bump ruff from 0.0.283 to 0.0.284 (337)
- update tqdm requirement from <4.65.1 to <4.65.3 (335)
- bump ruff from 0.0.282 to 0.0.283 (334)
- update pygments requirement from <2.15.2 to <2.16.2 (332)
- prettier --prose-wrap=preserve
- bump sphinx from 7.1.1 to 7.1.2 (331)
- bump ruff from 0.0.281 to 0.0.282 (330)
- update commitizen requirement from <3.5.5 to <3.6.1 (327)
- update numpy requirement from <1.25.2 to <1.25.3 (328)
- bump ruff from 0.0.280 to 0.0.281 (326)
- update commitizen requirement from <3.5.4 to <3.5.5 (325)
- bump sphinx from 7.0.1 to 7.1.1 (324)
- bump pip from 23.2 to 23.2.1 in /.github/workflows (321)
- bump ruff from 0.0.278 to 0.0.280 (320)
- bump sphinx-autodoc-typehints from 1.23.3 to 1.24.0 (319)
- update click requirement from <8.1.6 to <8.1.7 (318)

chore

- update pre-commit hooks
- update pre-commit hooks
- update pre-commit hooks (333)
- ruff 0.281 keys() refactor
- update pre-commit hooks
- update pre-commit hooks

Feat

- Add spec to `fit-titration` dropping fit_titration_old
- Add fit-titration glob dropping fit_titration_glob_old

Docs

- Update ipynb

Test

- Update coverage run

Build

- update arviz requirement from <0.16.1 to <0.16.2 (317)
- bump pre-commit from 3.0.1 to 3.3.3 (315)
- Eliminate pip-deepfreeze
- Relocate 'docs' from 'envs.docs.scripts' to 'default.scripts'
- Relocate coverage into tests
- Relocate 'lint' from 'envs.lint.scripts' to 'default.scripts'
- bump pip from 23.1.2 to 23.2 in /.github/workflows (314)
- update commitizen requirement from <3.5.3 to <3.5.4 (313)
- Eliminate dependency on typeguard

Refactor

- Simplify plot_emcee fix options in fit-titration glob
- Reorganize `fit-titration glob` test data files
- Add FitKwargs into TitrationAnalysis to streamline fit() method
- Remove type ignore in PlateScheme also add PlateScheme test

chore

- update pre-commit hooks (316)

Docs

- Fix zenodo badge to auto-update

Refactor

- Remove silencer noqa for merge_md and norm metadata

Feat

- Change tecan and enspire as subcommands of `ppr`
- pr.tecan exports png for each well
- **prtecan**: new fit; sort results; add export_png
- New glob-emcee fitting; add note_to_csv

Fix

- plots of critical cl fit
- tit_cl K>epsilon; refactor is_ph as Titration attribute
- fit_tecan in main cli

Docs

- Update tutorials and (partially) UML
- Update zotero DOI
- Add click doc for note_to_csv

Build

- update click requirement from <8.1.5 to <8.1.6 (311)
- update lmfit requirement from <1.2.2 to <1.2.3 (312)
- update arviz requirement from <0.15.2 to <0.16.1 (310)
- bump ruff from 0.0.277 to 0.0.278 (309)
- bump actions/upload-pages-artifact from 1 to 2 (308)
- update numpy requirement from <1.25.1 to <1.25.2 (306)
- update click requirement from <8.1.4 to <8.1.5 (304)
- update matplotlib requirement from <3.7.2 to <3.7.3 (303)
- bump ruff from 0.0.275 to 0.0.277 (301)

Refactor

- Rename TitrationAnalysis.results and .result_dfs
- Use `is_ph` instead of `kind`
- Removes confint
- **cli**: pr.tecan and pr.enspire
- Drop py3.8

chore

- Remove redundant NaN filtering
- update pre-commit hooks (307)
- update pre-commit hooks (300)

Docs

- fix pointer to changelog in project.toml (274)

Build

- update pandas requirement from <2.0.3 to <2.0.4 (297)
- update scipy requirement from <1.11.1 to <1.11.2 (296)
- bump sphinx-autodoc-typehints from 1.23.2 to 1.23.3 (294)
- update pytest requirement from <7.3.3 to <7.4.1 (292)
- update commitizen requirement from <3.3.1 to <3.5.3 (291)
- update scipy requirement from <1.10.2 to <1.11.1 (293)
- bump ruff from 0.0.272 to 0.0.275 (289)
- update mypy requirement from <1.4 to <1.5 (286)
- update numpy requirement from <1.24.4 to <1.25.1 (284)
- bump sphinx-autodoc-typehints from 1.23.0 to 1.23.2 (283)
- update commitizen requirement from <3.2.3 to <3.3.1 (281)
- update pytest requirement from <7.3.2 to <7.3.3 (279)
- bump ruff from 0.0.270 to 0.0.272 (278)
- bump pandas-stubs from 2.0.1.230501 to 2.0.2.230605 (276)

Refactor

- **docs**: Drop rpy; convert into LMfit.ipynb

chore

- update pre-commit hooks (295)
- update pre-commit hooks (285)
- update pre-commit hooks (280)
- update pre-commit hooks (275)

Feat

- **prenspire**: build and fit single-and-global SVD-or-band titrations
- **clop**: fit_titration for old note
- **clop**: `fit titration global old` and `fit titration old` as cli command
- add \_\_version\_\_ for output into "Meas-{version}"

Test

- **clop**: add test for new fit_titration cli

Docs

- Add instruction to install auto completion

Build

- remove pygrep-hook: python-check-blanket-noqa and python-no-eval
- update coverage[toml] requirement from <7.2.7 to <7.2.8 (272)
- update pandas requirement from <2.0.2 to <2.0.3 (271)
- bump nbsphinx from 0.9.1 to 0.9.2 (269)
- bump ruff from 0.0.269 to 0.0.270 (268)
- update coverage[toml] requirement from <7.2.6 to <7.2.7 (267)
- update rpy2 requirement from <3.5.12 to <3.5.13 (265)
- bump ruff from 0.0.267 to 0.0.269 (264)

Refactor

- **prenspire**: new Note (titration build) and fit_titration cmd; keep the old
ExpNote for compatibility with old note files.
- **prenspire**: analyze_spectra_glob for SVD or multiple bands
- **prenspire**: SVD spectra expand (with helpers functions) on old
`fit_titration` script

chore

- update pre-commit hooks (270)
- update pre-commit hooks (266)