Command Line Interface
- Exit with a (hopefully) helpful error message if no input file with the given extension is found in the bin folder (instead of simply crashing)
- Renamed `cocopye toolbox` into `cocopye setup`
- For `run`, `download-dependencies` and `testrun`: Allow `--pfam24` flag after the subcommand
- Use `cocopye_output.csv` as default for the `-o`/`--outfile` parameter
- Print the location of the currently used configuration file on startup
- Replaced the placeholder description and epilog by real ones
Webserver
- Reenable the submit button after a task stopped with an error
- Use wss for websockets when using an https connection