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- Bugfix: connor was mangling left hand side of right hand consensus reads
- Fuzzy grouping of pairs into families based on left or right UMI match
- Fuzzy grouping of pairs into families based on UMI within Hamming distance
- Command line args for hamming distince, consensus threshold, min orig reads
- Extended logging to assist in overall diagnostics
- Generate additional file of alignments excluded from consensus (diagnostic)
- Added UMI sequence tag (X0)