Cpg-flow

Bug Fixes

- **package.yaml**: Fix setup step add git clone ([`21c1400`](https://github.com/populationgenomics/cpg-flow/commit/21c1400a6083df40dffa66b9a642bf3f7d8892f4))

- **package.yaml**: Remove redundant checkout step ([`0634f44`](https://github.com/populationgenomics/cpg-flow/commit/0634f445361bf050d6243d142411c8738601c9e7))

- **package.yaml**: Use github token in setup step ([`8601d62`](https://github.com/populationgenomics/cpg-flow/commit/8601d62983cdac7b6a70429ac1d1c1c0aa4cf0f2))

- **package.yaml**: Use bot token ([`99814f6`](https://github.com/populationgenomics/cpg-flow/commit/99814f61d5f91bed00c49bf954da4c13b247a574))

- **package.yaml**: Add verbose logging ([`6fca5fb`](https://github.com/populationgenomics/cpg-flow/commit/6fca5fb4688840f38322db90eafb8183b9f5b835))

- **pyproject.toml,uv.lock**: Rm unused dev ([`26c9361`](https://github.com/populationgenomics/cpg-flow/commit/26c93615ed4a53ca8c239f57d98b99666dcaf6c6))

- **package.yaml,pyproject.toml**: Add ignore token for push ([`517d522`](https://github.com/populationgenomics/cpg-flow/commit/517d522fdfad4c4042f0dd4a472655ff0697c4b9))

- **package.yaml**: Deploy key to exempt action from br protection rules ([`5683a10`](https://github.com/populationgenomics/cpg-flow/commit/5683a10b95daa9a772360d75912572cac8dc9c9e))

- **package.yaml**: Push to pypi not testpypi ([`3a59082`](https://github.com/populationgenomics/cpg-flow/commit/3a59082568d6cf2d4394714020c6eb7101ea8ba3))

Chores

- Merge pull request 16 from populationgenomics/pypi-deploy ([`13a9f7d`](https://github.com/populationgenomics/cpg-flow/commit/13a9f7d737e1a73b86cca0c62c7c6c5c8aadf91a))

Pypi deploy

- Merge pull request 15 from populationgenomics/pypi-deploy ([`20b4886`](https://github.com/populationgenomics/cpg-flow/commit/20b48861685b2927186f69fa6338cec4eeb5f1c3))

fix(package.yaml): deploy key to exempt action from br protection rules

Refactoring

- **.dummy**: Test token ([`fc48eb5`](https://github.com/populationgenomics/cpg-flow/commit/fc48eb52dcd4bc8a409cf229b7a9c2ed10288939))

- **.dummy**: Test token ([`ec00646`](https://github.com/populationgenomics/cpg-flow/commit/ec006467788e26482fd06c639c649c38feaae597))

- **.dummy**: Remove file, check token permissions ([`a5a36df`](https://github.com/populationgenomics/cpg-flow/commit/a5a36df0760595a421f606dae431ebfd770aa37f))

- **.dummy**: Test push to alpha using BOT_ACCESS_TOKEN ([`8284ac1`](https://github.com/populationgenomics/cpg-flow/commit/8284ac14890432ba0182aec0f2fb1feb2f41f278))

Bug Fixes

- **./,.github/workflows/**: Get package.yaml working ([`c1992f7`](https://github.com/populationgenomics/cpg-flow/commit/c1992f7595684e0c6ae4852358ae09526e557fe0))

Bug Fixes

- **Makefile,pyproject.toml**: Debug ci-build command ([`cdf2fcf`](https://github.com/populationgenomics/cpg-flow/commit/cdf2fcfe567ec0de7d7dc8fa3109cc6b28b744ad))

- **package.yaml,pyproject.toml**: Rm uv, base build with version fix ([`559d16b`](https://github.com/populationgenomics/cpg-flow/commit/559d16b10797927caee58cd1bf4245269271eac7))

- **package.yaml**: Add git auth ([`601669c`](https://github.com/populationgenomics/cpg-flow/commit/601669cbe7363dd56636d5ba96c345854e72e557))

- **package.yaml**: Fix package.yaml manual semantic command ([`f733c90`](https://github.com/populationgenomics/cpg-flow/commit/f733c90b050a012515284dc985d116b972744c71))

- **package.yaml,.pypirc**: Run semantic release manually ([`f872765`](https://github.com/populationgenomics/cpg-flow/commit/f8727656dd072635f87dde02f9b835cd9083c61b))

- **.dummy,package.yaml**: Trigger release, use venv in workflow ([`36a4057`](https://github.com/populationgenomics/cpg-flow/commit/36a405714c1eea6684c6308f001a7bbeddae0b31))

- **pyproject.toml**: Fix build command ([`37c43ec`](https://github.com/populationgenomics/cpg-flow/commit/37c43ec53d87948dc7db984d51d58dba92b1fafa))

- **./,.github/workflows/**: Fix package.yaml build command ([`e41138c`](https://github.com/populationgenomics/cpg-flow/commit/e41138c72fcf14bda795756f0c584f429cae37fd))

- **Makefile,pyproject.toml**: Update build system ([`759ef2d`](https://github.com/populationgenomics/cpg-flow/commit/759ef2dcacee15050d49fe006ff3f4815375f1b3))

Bug Fixes

- **.dummy**: Fix forces a release ([`6e34931`](https://github.com/populationgenomics/cpg-flow/commit/6e349310bf2b470952bcedcce28b47ae01cb8d8d))

Build System

- **pyproject.toml**: Fix project version ([`ddac37c`](https://github.com/populationgenomics/cpg-flow/commit/ddac37c3e53afd0a69b1f63abccb2cf239a36ec3))

Bug Fixes

- **pyproject.toml**: Remove dynamic version ([`4dcc2b9`](https://github.com/populationgenomics/cpg-flow/commit/4dcc2b9aa219c9a2e3ba041db71f20800c5b17a6))

- **pyproject.toml**: Remove dynamic version ([`9beca1f`](https://github.com/populationgenomics/cpg-flow/commit/9beca1fa8d22edf373b998c7e6cddcfb41c5e11a))

Bug Fixes

- **.dummy**: Fix commit to trigger release ([`e8a15a1`](https://github.com/populationgenomics/cpg-flow/commit/e8a15a1a2c5eec19c656a1832338ff736208db14))

Continuous Integration

- **package.yaml**: Add verbose to pypi upload ([`a431fa6`](https://github.com/populationgenomics/cpg-flow/commit/a431fa67a09e41a2f2527a128d264dfb007411ba))