Ctapipe

===================

* Major speed improvements to calibration code, particularly
``NeighborPeakIntegrator`` (Jason Watson, 490), which now uses some
compiled c-code for speed.

* ``GeometryConverter`` now works for all cameras (Tino Michael, )

* Plotting improvements when overlays are used (MaxNoe, 489)

* Fixes to coordinate ``PlanarRepresentation`` (MaxNoe, 506)

* HDF5 output for charge resolution calculation (Jason Watons, 488)

* Stastical errors added to sensitivity calculation (Tino Michel, 508)

* Error estimator for direction and h_max fits in
``HillasReconstructor`` (Tino Michael, 509, 510)

==================

* add system data in ctapipe-info
* don't import info in tools/init
* add concept of entity role to provenance
* change warning to debug message
* turn default activity warning into a debug message (not really a problem)
* test for failure of writing output file
* better log format + tool finish message
* pep8 reformatting
* more verbose default log message
* add accessor for activity outputs and inputs
* register files loaded via "from_name" in provenance
* make sure setup is called after provenance is initialized
* test for failure of writing output file
* better log format + tool finish message
* pep8 reformatting
* Fixed auto documentation errors
* more verbose default log message
* add accessor for activity outputs and inputs
* register files loaded via "from_name" in provenance
* make sure setup is called after provenance is initialized
* continue with warning if output file exists (do not overwrite)
* Fixed underline bug in docs
* Fixed underline bug in docs
* Fixed underline bug in docs
* Fixed underline bug in docs
* add telescope_description column to optics table for convenience
* Fixed failing tests
* Updating naming scheme for telescopes
* fixed some bugs in example notebooks
* explicitly catch ImportError
* removed old muon code that somehow crept back in
* behavior of constructor also changed in astropy 2
* remove healpy from list of packages (not needed)
* add missing call to super().__init__(), which broke PlanarRepresentation for astropy 2
* import FrameAttribute as Attribute for cross-compaibility with astropy 2.x
* fixed tests
* minor changes
* Updated likelihood expectation calculation to use safe version of likelihood
* modified test to check for relative uncertainty (should be more stable)
* added deepcopy in base init -- protect against empty X[] in fit
* pipeline should work now
* reverting shower_max to enable pull request
* Fixed error when taking log of quantity
* Fixed import problem in hillas intersection test
* minor cleanup of bug
* Improved documentation for functions guessing the shower maximum given the reconstructed energy
* Significantly improved documentation for the ImPACT code
* solving migrad nan issue and change shower max to return depth (not height)
* register outputs from ctapipe-dump-instrument with provenance
* really basic example
* fix bug in definition of mcheader
* Use StandardScaler class
* added table output for OpticsDescriptions (in SubarrayDescription)
* Cope with data in multiple telescopes in an event
* update reco/__init__.py so that ShowerMaxEstimator appears in docs
* removed __all__ token
* Added scale_features method to RegressorClassifierBase class
* added test unit for event classification with sklearn MLPClassifier
* Added simple tests for image axis intersection
* Added Hillas algorithm 1 style event reconstruction
* moved from simple lists to named tuples
* Removed print statements
* Added LM options
* Updated scaling factors
* Updated viewers to allow backgrounds to be added more easily, updated scaling factors on the Hillas parameters
* Added low gain channel
* Changed scaling values
* Removed unused functions and added optional fit priors
* Added option to use LM minimiser
* Fixed camera rotation problems and added functions to draw likelihood surfaces
* Allowed selection of minimiser to be used for ImPACt
* Changed references from GCT to GATE
* fixed zenith angle calculation
* Added config options of cuts
* Removed fixed Xmax from fit
* Added comments
* Added comments
* general checks
* Fixed for use with DSTs
* Added comments
* Changed structure such that set parameters function is not need
* Changed structure such that set parameters function is not need
* Added tool for performing hillas based reconstruction
* Fixed energy reconstruction and added output into the correct format
* Created tool for reco using Hillas parameters
* Added MVA based energy reconstruction algorithm
* Fixed incorrect calculation of impact distance when getting the training parameters
* Added Tool to output Hillas parameters into FITS files
* Code cleanup and addition of command line options
* Added cut to prevent 0 width events
* Switched to use of FITS templates and fixed use of depth tables
* Store system as class member
* Fixed incorrect inversion of axes
* renamed to work correctly with new ctapipe version
* Fixed mislabelled axes
* Added ImPACT reconstruction tool
* Added fix for pixel neighbour list
* Added Xmax reconstruction
* modified for use with arbitrary numpy axis
* Fixed error in assignment of telescope coordinates in core reconstruction
* Converted the reconstruction code to a class, which inherits from the higher level reconstruction classes. Added calculation of the uncertatinties on the position and core. Changed output to the common shower output.
* Removed print statement
* Removed print
* converted to use dictionaries as input
* reverted changes
* added fix to numpy array size
* Added simple script for testing energy reconstruction methods
* Update Hillas intersection code to use correct rotation angle
* added ground projection info
* Added function for tilted reconstruction
* Added simple reconstruction tests
* Changed to use camera object
* Added Ground reconstruction function
* Added Ground reconstruction function
* Added instrument info class
* Added simple Hillas reco code
* Cleaned up imports
* Created example script for simple Hillas Reco
* Added Hillas reco example

===================

* remove unused import
* get rid of hard-coded telid in camera plotter test
* use SubarrayDescription in array plotter test
* use SubarrayDescription in HillasReconstructor
* get rid of instrument.get_camera_types (replaced by SubarrayDescription)
* remove geometry cache from EventViewer
* remove geom_dict from CameraPlotter (replace with new instrument class)
* update docs for instrument classes
* get git tags in case they are not there
* fix spelling error in directory name
* update examples to use SubarrayDescription
* added better docs for instrument module
* fix bug in filling mirror_area and num_mirror_tiles
* improve SubarrayDescription and add tests
* add example for instrument info
* added demo notebook
* moved obsolete examples away
* update calibration_pipeline example to use SubarrayDescription
* add __all__ to __init__
* add more docstring info
* remove reference to old InstrumentDescription
* removed some unmaintained code and renamed old InstrumentDescription to mc_config
* added `select_subarray` to get sub-subarrays from a SubarrayDescription
* reformatting
* add missing name option to subarray
* fix some formatting problems and extra imports
* fix doc error
* implement ArrayDescription.to_table() and .info()
* add docs
* added SubarrayDescription and use in event.inst
* start to replace the `inst` container with TelescopeDescription
* fix tests
* updated docstrings
* updated docstrings
* fixed optics lookup table
* added better __str__ and __repr__
* added more docstring details for OpticsDescription and TelescopeDescription
* import optics and camera classes to instrument level
* add preliminary OpticsDescription and TelescopeDescription
* dump basic optics desc to file in dump_instrument
* fix option in pep8 config
* remove config from .lanscape.yml that is duplicated in setup.cfg
* update pep8 options
* also set max-line-length in setup.cfg pep8 section
* ignore log-format interpolation warning for now
* added some pep8 exclusions
* Fix docs and examples
* Fix repr of Container
* Remove more merge artifacts
* Fix merge artifacts
* Added function for parameterisation of image timing
* Use fields instead of attributes for Container
* Rename Item to Field, fix meta attribute
* TableReader didn't correctly copy the headers to the container
* added spaces around some more operators
* Revert "Improve containers to use __slots__"
* code now Landscape compliant
* added landscape.io settings file
* add code health badge and reformat
* Remove unnecessary if and add test
* fixed imports and unused vars
* fixed unused imports and __all__
* fix a bunch of flake8 warnings
* remove unused variable
* allow binary operator on newline rule
* pep8 formatting
* removed strange comment
* autopep8 formatting
* autopep8 to remove style warnings
* remove commented-out code
* removed redundant goal/goal → 1
* removed incorrect return in multiprocess/connections.py __init__
* memory issues? reduced number of draws
* sensitivity now uses reconstructed energy instead of MC energy
* update flake8 options
* improved getting-started for developers
* Catch ImportError instead of ModuleNotFoundError for python 3.5
* Fix items() and __getstate__ of Container
* Fix typo
* Fix typo
* Fix docstring
* Reimplement setitem
* Fix pickling and reset
* Add missing Item
* Make container use __slots__ through metaclass
* docs must build without warning for build to pass
* fix bad docstrings and reformat
* fixed bad docstrings
* cleaned up docs and added missing __all__
* fixed intersphinx inventory warnings
* fix wrong exception type in read_release_version
* add option to disable progressbar
* pep8
* removed outdated example
* clean up flake8 options
* fix tests accordingly
* renamed some N to n
* added seed at beginning of function
* implemented comments
* loosened an assertion a bit; fixed some doc-strings
* one more test for data
* more updates and added a test specific for sensitivity
* more work on test and event-drawing methods
* started fixing some tests
* small overhaul
* cleanup of test plots
* moved from log to linear binning in energy -- modified event weights; looks okayish now
* loads of stuff
* removed function call in test file
* added sensitivity_energy_bin_edges argument to have a dedicated binning for sensitivity
* fixed random draw from histogram
* added energy event sampler -- WiP, needs testing
* so, now...
* added time stamp generation to sensitivity module
* some renames, doc-fixes and default value tweaks
* renamed function argument
* fixed that last one...
* minor tweak in reverting table order
* inverted count-logic of `cut` and added `keep` instead added capability to add cut functions in bulk through a dict
* minor tweak
* brought test_Sensitivity.py up to speed
* improved summing over events in on- and off-region
* optimisation, bug-fixing, document-updating
* refactored to be more flexible towards particle classes
* minor changes and typos in docs
* added format to efficiency column
* modified docs
* added module for PS sensitivity
* switched arguments in set_cut function
* fixed test assertion
* updated documentation
* switched from dict to OrderedDict
* added cutflow class and unit test