Cucim

🚀 New Features

- Support Aperio SVS with CPU LZW and jpeg2k decoder ([141](https://github.com/rapidsai/cucim/pull/141)) [[gigony](https://github.com/gigony)](https://github.com/gigony](https://github.com/gigony))
- Add NVTX support for performance analysis ([144](https://github.com/rapidsai/cucim/pull/144)) [[gigony](https://github.com/gigony)](https://github.com/gigony](https://github.com/gigony))
- Normalize operation ([150](https://github.com/rapidsai/cucim/pull/150)) [[shekhardw](https://github.com/shekhardw)](https://github.com/shekhardw](https://github.com/shekhardw))

🐛 Bug Fixes

- Load libcufile.so with RTLD_NODELETE flag ([177](https://github.com/rapidsai/cucim/pull/177)) [[gigony](https://github.com/gigony)](https://github.com/gigony](https://github.com/gigony))
- Remove rmm/nvcc dependencies to fix cudaErrorUnsupportedPtxVersion error ([175](https://github.com/rapidsai/cucim/pull/175)) [[gigony](https://github.com/gigony)](https://github.com/gigony](https://github.com/gigony))
- Do not compile code with nvcc if no CUDA kernel exists ([171](https://github.com/rapidsai/cucim/pull/171)) [[gigony](https://github.com/gigony)](https://github.com/gigony](https://github.com/gigony))
- Fix a segmentation fault due to unloaded libcufile ([158](https://github.com/rapidsai/cucim/pull/158)) [[gigony](https://github.com/gigony)](https://github.com/gigony](https://github.com/gigony))
- Fix thread contention in Cache ([145](https://github.com/rapidsai/cucim/pull/145)) [[gigony](https://github.com/gigony)](https://github.com/gigony](https://github.com/gigony))
- Build with NumPy 1.17 ([148](https://github.com/rapidsai/cucim/pull/148)) [[jakirkham](https://github.com/jakirkham)](https://github.com/jakirkham](https://github.com/jakirkham))

📖 Documentation

- Add Jupyter notebook for SVS Support ([147](https://github.com/rapidsai/cucim/pull/147)) [[gigony](https://github.com/gigony)](https://github.com/gigony](https://github.com/gigony))
- Update change log for v21.10.01 ([142](https://github.com/rapidsai/cucim/pull/142)) [[gigony](https://github.com/gigony)](https://github.com/gigony](https://github.com/gigony))
- update docs theme to pydata-sphinx-theme ([138](https://github.com/rapidsai/cucim/pull/138)) [[quasiben](https://github.com/quasiben)](https://github.com/quasiben](https://github.com/quasiben))
- Update Github links in README.md through script ([132](https://github.com/rapidsai/cucim/pull/132)) [[gigony](https://github.com/gigony)](https://github.com/gigony](https://github.com/gigony))
- Fix GDS link in Jupyter notebook ([131](https://github.com/rapidsai/cucim/pull/131)) [[gigony](https://github.com/gigony)](https://github.com/gigony](https://github.com/gigony))
- Update notebook for the interoperability with DALI ([127](https://github.com/rapidsai/cucim/pull/127)) [[gigony](https://github.com/gigony)](https://github.com/gigony](https://github.com/gigony))



🛠️ Improvements

- Update `conda` recipes for Enhanced Compatibility effort by ([164](https://github.com/rapidsai/cucim/pull/164)) [[ajschmidt8](https://github.com/ajschmidt8)](https://github.com/ajschmidt8](https://github.com/ajschmidt8))
- Fix Changelog Merge Conflicts for `branch-21.12` ([156](https://github.com/rapidsai/cucim/pull/156)) [[ajschmidt8](https://github.com/ajschmidt8)](https://github.com/ajschmidt8](https://github.com/ajschmidt8))
- Add cucim.kit.cumed plugin with skeleton ([129](https://github.com/rapidsai/cucim/pull/129)) [[gigony](https://github.com/gigony)](https://github.com/gigony](https://github.com/gigony))
- Update initial cpp unittests ([128](https://github.com/rapidsai/cucim/pull/128)) [[gigony](https://github.com/gigony)](https://github.com/gigony](https://github.com/gigony))
- Optimize zoom out implementation with separate padding kernel ([125](https://github.com/rapidsai/cucim/pull/125)) [[chirayuG-nvidia](https://github.com/chirayuG-nvidia)](https://github.com/chirayuG-nvidia](https://github.com/chirayuG-nvidia))
- Do not force install linux-64 version of openslide-python ([124](https://github.com/rapidsai/cucim/pull/124)) [[Ethyling](https://github.com/Ethyling)](https://github.com/Ethyling](https://github.com/Ethyling))

🐛 Bug Fixes

- fix failing regionprops test cases ([110](https://github.com/rapidsai/cucim/pull/110)) [grlee77](https://github.com/grlee77)

📖 Documentation

- Forward-merge branch-21.08 to branch-21.10 ([88](https://github.com/rapidsai/cucim/pull/88)) [jakirkham](https://github.com/jakirkham)
- Update PyPI cuCIM v21.08.01 README.md and CHANGELOG.md ([87](https://github.com/rapidsai/cucim/pull/87)) [gigony](https://github.com/gigony)

🚀 New Features

- Support raw RGB tiled TIFF ([108](https://github.com/rapidsai/cucim/pull/108)) [gigony](https://github.com/gigony)
- Add a mechanism for user to know the availability of cucim.CuImage ([107](https://github.com/rapidsai/cucim/pull/107)) [gigony](https://github.com/gigony)
- Enable GDS and Support Runtime Context (__enter__, __exit__) for CuFileDriver and CuImage ([106](https://github.com/rapidsai/cucim/pull/106)) [gigony](https://github.com/gigony)
- Add transforms for Digital Pathology ([100](https://github.com/rapidsai/cucim/pull/100)) [shekhardw](https://github.com/shekhardw)

🛠️ Improvements

- ENH Replace gpuci_conda_retry with gpuci_mamba_retry ([69](https://github.com/rapidsai/cucim/pull/69)) [dillon-cullinan](https://github.com/dillon-cullinan)

🐛 Bug Fixes

- Remove int-type bug on Windows in skimage.measure.label ([72](https://github.com/rapidsai/cucim/pull/72)) [grlee77](https://github.com/grlee77)
- Fix missing array interface for associated_image() ([65](https://github.com/rapidsai/cucim/pull/65)) [gigony](https://github.com/gigony)
- Handle zero-padding version string ([59](https://github.com/rapidsai/cucim/pull/59)) [gigony](https://github.com/gigony)
- Remove invalid conda environment activation ([58](https://github.com/rapidsai/cucim/pull/58)) [ajschmidt8](https://github.com/ajschmidt8)

📖 Documentation

- Fix a typo in cache document ([66](https://github.com/rapidsai/cucim/pull/66)) [gigony](https://github.com/gigony)

🚀 New Features

- Pin `isort` hook to 5.6.4 ([73](https://github.com/rapidsai/cucim/pull/73)) [charlesbluca](https://github.com/charlesbluca)
- Add skimage.morphology.thin ([27](https://github.com/rapidsai/cucim/pull/27)) [grlee77](https://github.com/grlee77)

🛠️ Improvements

- Add SciPy 2021 to README ([79](https://github.com/rapidsai/cucim/pull/79)) [jakirkham](https://github.com/jakirkham)
- Use more descriptive ElementwiseKernel names in cucim.skimage ([75](https://github.com/rapidsai/cucim/pull/75)) [grlee77](https://github.com/grlee77)
- Add initial Python unit/performance tests for TIFF loader module ([62](https://github.com/rapidsai/cucim/pull/62)) [gigony](https://github.com/gigony)
- Fix `21.08` forward-merge conflicts ([57](https://github.com/rapidsai/cucim/pull/57)) [ajschmidt8](https://github.com/ajschmidt8)

🐛 Bug Fixes

- Update `update-version.sh` ([42](https://github.com/rapidsai/cucim/pull/42)) [ajschmidt8](https://github.com/ajschmidt8)

🛠️ Improvements

- Update environment variable used to determine `cuda_version` ([43](https://github.com/rapidsai/cucim/pull/43)) [ajschmidt8](https://github.com/ajschmidt8)
- Update version script to remove bump2version dependency ([41](https://github.com/rapidsai/cucim/pull/41)) [gigony](https://github.com/gigony)
- Update changelog ([40](https://github.com/rapidsai/cucim/pull/40)) [ajschmidt8](https://github.com/ajschmidt8)
- Update docs build script ([39](https://github.com/rapidsai/cucim/pull/39)) [ajschmidt8](https://github.com/ajschmidt8)

- Initial release of cuCIM including cuClaraImage and [cupyimg](https://github.com/mritools/cupyimg).