Cuqipy

What's Changed
* Add gradient to uniform distribution by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/526
* Fix typo (PCN intead of pCN in experimental) in BayesianProblem by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/534
* update NUTS acc rate list update by amal-ghamdi in https://github.com/CUQI-DTU/CUQIpy/pull/536
* fix NUTS acceptance rate by amal-ghamdi in https://github.com/CUQI-DTU/CUQIpy/pull/539
* add test for counting accepted samples in NUTS by amal-ghamdi in https://github.com/CUQI-DTU/CUQIpy/pull/540
* Checkpointing nuts by amal-ghamdi in https://github.com/CUQI-DTU/CUQIpy/pull/530
* Display acc rate on progress bar by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/533
* update links in README by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/523
* Remove pre_sample, pre_warmup from NUTS and fix warning by amal-ghamdi in https://github.com/CUQI-DTU/CUQIpy/pull/545
* Add demos for use of truncated Normal by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/549
* Add (iid) truncated normal and also add grad to normal by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/542
* Add ADMM + parameter reordering FISTA by jeverink in https://github.com/CUQI-DTU/CUQIpy/pull/553
* creation of a MYULAnew class by remilaumont in https://github.com/CUQI-DTU/CUQIpy/pull/407
* remove file added by mistake by amal-ghamdi in https://github.com/CUQI-DTU/CUQIpy/pull/565
* Update __repr__ method in Sampler class by amal-ghamdi in https://github.com/CUQI-DTU/CUQIpy/pull/566
* Add AffineModel by siljachr in https://github.com/CUQI-DTU/CUQIpy/pull/486
* fix copy, prior name in MYULA + docs artifacts by amal-ghamdi in https://github.com/CUQI-DTU/CUQIpy/pull/567
* Add how-to on Image2D by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/572
* Regularized Gaussian extension: TV by jeverink in https://github.com/CUQI-DTU/CUQIpy/pull/564
* Add support for algebra by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/583
* Make the interface of restorator more robust by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/589
* Add random variable class by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/597
* Refine existing solvers by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/598
* add implementation of _ProductGeometry by amal-ghamdi in https://github.com/CUQI-DTU/CUQIpy/pull/593
* Add support for conditioning on random variables by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/600
* Use scipy.optimize.lsq_linear in RegularizedLinearRTO for nonnegativity by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/602
* Update _geometry.py with correct link to howto on image2d by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/590
* Regularized Gaussian: TV with Gibbs by jeverink in https://github.com/CUQI-DTU/CUQIpy/pull/587
* Add sample method to RV by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/603
* Regularized Gaussian: Combined regularized and constraint presets by jeverink in https://github.com/CUQI-DTU/CUQIpy/pull/612
* Add rv method to Distribution class and update artifact version by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/611

New Contributors
* remilaumont made their first contribution in https://github.com/CUQI-DTU/CUQIpy/pull/407
* siljachr made their first contribution in https://github.com/CUQI-DTU/CUQIpy/pull/486

**Full Changelog**: https://github.com/CUQI-DTU/CUQIpy/compare/v1.2.0...v1.3.0

What's Changed
* Ensure constants are stored in densities when reducing to single density in joint distribution by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/482
* Replace progressbar2 by tqdm by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/502
* Fix plot of 1D geometries by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/497
* Add 479 experimental module in bayesian problem by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/500
* move tqdm from requirement-dev to requirements by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/510
* Improve (hopefully) how HybridGibbs uses samplers state and history by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/503
* Update documentation by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/508
* Update documentation on experimental mcmc module by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/513
* Add prefix to sampling progress by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/520
* Update example in HybridGibbs by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/521
* Fix issue of invalid proposals being accepted by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/518


**Full Changelog**: https://github.com/CUQI-DTU/CUQIpy/compare/v1.1.1...v1.2.0

What's Changed
* Remove postfix New (only) from sampler names by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/477
* update installation instructions and use with vscode by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/480
* Fix HybridGibbs using initial point from sampling strategy by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/484
* Add repr method for cuqi samples by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/472
* Sprint34 add 1D, 2D utility plot function by amal-ghamdi in https://github.com/CUQI-DTU/CUQIpy/pull/491


**Full Changelog**: https://github.com/CUQI-DTU/CUQIpy/compare/v1.1.0...v1.1.1

What's Changed
* Sampler rework via MCMC module (experimental module) by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/356
* Make progressbar2 dependency not explicit by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/385
* Sampler rework ULANew by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/380
* Sampler rework: refactor CWMH sampler by amal-ghamdi in https://github.com/CUQI-DTU/CUQIpy/pull/376
* fix arviz import by amal-ghamdi in https://github.com/CUQI-DTU/CUQIpy/pull/396
* Sampler rework LinearRTONew and RegularizedLinearRTONew by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/382
* Implement get_state, set_state, get_history, set_history in base class. by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/390
* Sampler rework: NUTS by amal-ghamdi in https://github.com/CUQI-DTU/CUQIpy/pull/387
* TEST: Sampler rework ugla 2 by amal-ghamdi in https://github.com/CUQI-DTU/CUQIpy/pull/411
* Sampler rework UGLA by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/405
* reduce time on zexperimental tests by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/416
* Let Gaussian accept LinearOperator represented sqrtprec by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/420
* Add tune to pCN and rename pCN to PCN by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/418
* Allow samplers to be initialized without target by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/408
* Add Gibbs sampler by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/409
* Add (Hybrid) Gibbs sampler by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/425
* Regularized Gaussian extension: ModifiedHalfNormal by jeverink in https://github.com/CUQI-DTU/CUQIpy/pull/429
* Find valid samplers by jeverink in https://github.com/CUQI-DTU/CUQIpy/pull/446
* Regularized Gaussian extension: RegularizedUniform and Constraints/Nonnegative Gaussian/GMRF alternatives by jeverink in https://github.com/CUQI-DTU/CUQIpy/pull/430
* Add SmoothedLaplace by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/450
* General grad check in userdefined distribution by amal-ghamdi in https://github.com/CUQI-DTU/CUQIpy/pull/457
* Improve Conjugacy safety and flexibility by adding more validation by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/444
* Conjugacy safety and flexibility by jeverink in https://github.com/CUQI-DTU/CUQIpy/pull/359
* correct math display error in smoothed Laplace by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/459


**Full Changelog**: https://github.com/CUQI-DTU/CUQIpy/compare/v1.0.0...v1.1.0

What's Changed
* Allow lazy import of arviz by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/327
* Refactor GMRF and remove physical dim parameter by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/333
* Fix missing cookie png by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/336
* update plot_ci to make it more general by amal-ghamdi in https://github.com/CUQI-DTU/CUQIpy/pull/338
* Fix bug in distribution gallery by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/340
* Trivial fix to improve FD gradient computation performance by amal-ghamdi in https://github.com/CUQI-DTU/CUQIpy/pull/353
* Implemented Implicited Regularized Gaussians by jeverink in https://github.com/CUQI-DTU/CUQIpy/pull/291
* Make Gamma distribution multivariate by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/358
* Sprint27 beta grad by amal-ghamdi in https://github.com/CUQI-DTU/CUQIpy/pull/363
* Distributions: Disable conditioning on mutable variables if not conditioning variable by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/361

New Contributors
* jeverink made their first contribution in https://github.com/CUQI-DTU/CUQIpy/pull/291

**Full Changelog**: https://github.com/CUQI-DTU/CUQIpy/compare/v0.8.0...v1.0.0

What's Changed
* rename precision from Laplace distribution to scale by chaozg in https://github.com/CUQI-DTU/CUQIpy/pull/308
* Add feature request template by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/315
* Add bug report template by nabriis in https://github.com/CUQI-DTU/CUQIpy/pull/311


**Full Changelog**: https://github.com/CUQI-DTU/CUQIpy/compare/v0.7.0...v0.8.0