Cutevariant

Added
- Bug fixed

Added
VQL
- Add new operator HAS to filter a string in a string list separated by "&" . For instance "intron&exon"
- Make possible to create a condition within all samples. For instance " SELECT pos FROM variants WHERE sample[*].gt = 1 "

Variant view
- Add Tags option
- Refactor Formatter plugin.

Filter Editor & Fields Editor
- You can now drag and drop a condition from the Fields editor
- Preset are now saved into the config.yaml

Groupby plugin
- New groupby plugin making possible to group variants

Settings
- Replace QSettings by a yaml file stored in /home/.config/cutevariant/cutevariant.yaml on Linux

Added
- Add Harmonizome plugin [ test ]
- Improve actions for differents plugins )
- Refactor internal plugin system
- Fix bugs
-

- Refactor backend with new VQL to SQL flow
- Update Filters And Fields editor with new style and features
- Add new History plugin
- Add VCF and CSV export features
- Remove Groupby action from variant view
- Fixed bugs
- Hot fix : Samples if VQL filter expression generated wrong query

Added
Variant View
- Variant count and variant data are loaded separately in different thread
- Use a cache system to avoid loading variants 2 times during pagination
- Option to load links from a browser or from an XHR request . See (settings )
- Double click on variant to open default link ( see settings )
- Add Shortcut to mark variant as favorite ( space ) and move into the view ( left, right ... )
- Add a button to interrupt long query

VQL editor
- New completer showing fields information

Filter editor
- Update UI with branching and new buttons
- Filter can now be stored into a Json file

Variant Info
- New UI to edit current variant

Added
- Now sqlite contains NULL for empty string and float Nan values
- VQL support IS NULL and IS NOT NULL operation
- Fields can be ignored from Wizard before importation
- Variant view support double click with default link action
- Variant view has a debug button to show sql query and Explain Plan