Cyther

A bunch of bug fixes and internal problem solving:

Cut out unnecssary junk in the help text (gcc configurations)
Fixed some PEP8 issues
Split cyther.py into multiple modules to make everything easier to understand
Updated setup.cfg to include the correct README
Implemented entry_points on setup tools to make an executable script instead of doing it manually
Temporarily disabled the -p presets system
Cyther now works in three stages: cython, compile, link
The help text now prints the directories for 'include' and 'runtime' used by cyther
Updated test_cyther to correctly call cytherize
Reorganized the structure of the package
Reworked the 'package_data'
Cyther is now being locally tested on xubuntu
Stopped deploying the rst readme
Included cython in the install_requirements
Deleted the 'super-flags'. Probably not a very good practice...
Changed the signature of argparser. Now vastly superior to the previous model.
Reformatted the arguments.py file to be easier to read
Implemented an 'actions' file for the arguments to call directly!
Updated README badges to include links to build utilities and display more useful stuff
Made the error recognition system better when calling 'cyther.tools.call'
TODO (not yet done)
Implemented a 'makefile' system. This is not the primary method of compilation.
Instead of directly calling commands, it will make a 'makefile', for later modification if desired

Updated the README to include the current cytherize -h text
Added linereader to the packages included

Dealt with pypi nonsense
Took out auto deployment

Fixed an encoding bug
Deleted the test_cyther null command in the travis yaml
Took README.md out of the .gitignore
Fixed the distribution settings
Implemented some PEP8 rules
Added the __all__ attribute to cyther.py
Reordered all functions to make more sense
Properly encapsulated the 'script' code
Finally added proper documentation!

Gave travis a secure password in the yaml file
Fixed a few bugs with the run() function
Added a readme generator system to have the readme.md and readme.rst
Changed the '-t' option to '-s'
Added --execute and --timer to the commandline argument system
Made timer and execute be '-t', and '-x' respectively
Did some README updates
Added to the testing script significantly, and got travis to run that AND nosetests
Properly encapsulated the 'cytherize' and 'core' functions
Added the -X and -T options, meant for super powerful debugging and building
Gave the option to print the commands passed off only if wanted to
Formatted the '-h' text to be even more helpful!
Deleted the current useless documentation, adding new docs soon
Did some serious encapsulation and reorganization of entire compilation system
Fixed the error management system to make sure it is reliable
All communications from cyther to the user are located in a single place, and done through stdout

Added auto deployment
Added and implemented the run function, to extract code from a file and automatically run it