Dax

Bugfix for XnatSwitchProcessStatus

In addition to many bug fixes, this release adds support for:
-XNAT CR compatiblity
-Enhanced yaml processors
-Option to disable file locking for dax upload
-Option to source an env file in batch scripts
-Option to to use custom batch job template in processor
-Updated plugins for XNAT 1.7

This release addresses a couple bugs found in v0.7.0.

There were two missing imports that have now been added to setup.py.

XnatUtils.list_sessions had a blocking bug when subj_id2lab failed to get handedness, age, yob, etc.

Best,
Steve

Hi All,

We are all happy to announce the release of dax 0.7.0. One of the main feature in this release is the improvement of developing pipelines for dax. We are introducing the YAML format into our processor and settings.

Below are some of the updates:

AutoProcessor - processor using the yaml format. Very easy to write, no python skill needed.

Yaml Settings - Settings file have been converted to YAML format as well. Same idea, very easily written without the need of python skills.

NETRC - we moved the logins from the bashrc / profile file to a daxnetrc file that is more secure. Only you can read it and you can store your login inside via the XnatCheckLogin executable. You can store several XNAT hosts but only one user per host.

Reformating of Xnat_tools - Xnat tools have been reformat to remove the redundant code.

Reformating of dax_tools - Merging all the dax executables into one called dax. You can call the different function as follow: dax launch / dax build / dax update / dax upload ....

Dax test - dax test will work for both YAML files and standard python. You can call it directly by giving the file you generated. Try it out to test your YAML processor or YAML settings.

and several bugs fixed.

As always please feel free to post any bugs or requests on the issue tracker.

Cheers,
Ben

New in this release:
-AutoSpider
-regex in command-line utils
-improved documentation
-spider utilities

And several bugfixes

-Brian

Hi All,

We are all happy to announce the release of DAX 0.5.0. Below are some of the updates:
1. DISKQ - Vastly decreases the time when launching jobs.
2. Documentation - All canonical docs are now here http://dax.readthedocs.io/en/latest/
3. Xnatmirror - updated to pass source and destination variables
4. Several new utilities in XnatUtils for file handling (dicom etc) and the ability to run any matlab by giving a path
5. Better/imporved exception handling
6. Bug fix in dax_upload -> decreases the time to upload spiders and avoids timeout.
7. New configuration using dax_setup and a ini config file that is more readable
8. Bug fix for XnatUtils.is_bad_qa. Now actually works
9. Spider class and associated generators for templates
10. Allow the skipping of unusable scans in Xnatinfo (helpful for large projects).

As always please feel free to post any bugs or requests on the issue tracker.

Cheers,
Steve