We're excited to announce the release of DeepChopper v1.2.0! This version brings significant improvements and new features to our genomic language model for chimera artifact detection in Nanopore Direct RNA Sequencing.
🚀 New Features
- Improved encoding performance for large FASTQ files
- Enhanced prediction accuracy for chimera detection
- New web interface for easy interaction with the model
- Support for Python 3.12
🛠 Improvements
- Optimized Rust backend for faster processing
- Upgraded to PyTorch 2.1.0 and Lightning 2.1.2 for better performance
- Improved CLI with more intuitive commands and options
- Enhanced documentation and usage examples
🐛 Bug Fixes
- Fixed memory leak in long-running processes
- Resolved issues with multi-GPU support
- Corrected handling of edge cases in sequence chopping
📦 Installation
DeepChopper can now be installed via pip:
What's Changed
* use unzip files by cauliyang in https://github.com/ylab-hi/DeepChopper/pull/2
* feat: Add functions to encode FASTQ files by cauliyang in https://github.com/ylab-hi/DeepChopper/pull/3
* fix: Handle FileNotFoundError with logging instead of raising by cauliyang in https://github.com/ylab-hi/DeepChopper/pull/4
* refactor the interface by cauliyang in https://github.com/ylab-hi/DeepChopper/pull/5
* Model by cauliyang in https://github.com/ylab-hi/DeepChopper/pull/6
* Deploy by cauliyang in https://github.com/ylab-hi/DeepChopper/pull/8
* Deploy: publish to pypi by cauliyang in https://github.com/ylab-hi/DeepChopper/pull/14
* docs: Add bumpversion configuration file by cauliyang in https://github.com/ylab-hi/DeepChopper/pull/15
New Contributors
* cauliyang made their first contribution in https://github.com/ylab-hi/DeepChopper/pull/2
**Full Changelog**: https://github.com/ylab-hi/DeepChopper/commits/py-cli-v1.2.0