Deside

15 Sep 2024
- Update documentation

13 Jul 2024
- Update Figure 1ab
- Update workflow and plot functions during the revision

3 Feb 2024
- Update the documentation

16 Jan 2024
- Add GEP-level filtering in the PCA space of TCGA samples
- Add Dirichlet distribution to simulate the cellular proportions of bulk RNA-seq data

1 Oct 2023
- Update the workflow to contain the following parameters:
- `alpha_total_rna_coefficient`: the coefficient of total RNA for each cell type during the simulation of bulk RNA-seq data
- `cell_type2subtypes`: the dictionary of cell types and their subtypes
- Update the DNN model to include pathway profiles
- Update the documentation

2 Jun 2023
- Update documentation