Devsim

Use ``MMD_ATA`` preconditioner for SuperLU builds.

Android builds use special implementations for the Bernoulli function to prevent overflow.

``testing/pythonmesh1d.py`` demonstrates how to get mesh information using ``devsim.get_element_node_list``.

``examples/diode/tran_diode.py`` demonstrates transient diode simulation.

Allow python threading during long solve operations.

``delete_circuit``

``get_mesh_list``

Bugs

Fix issue [116](https://github.com/devsim/devsim/issues/116) where the contact current was being calculated incorrectly in transient mode.

Symbolic Factorization Reuse

The Intel MKL solver will now use reuse the symbolic factorization, if the simulation matrix sparse matrix pattern has not changed after the second nonlinear solver iteration. This reduces simulation time, but can result in numerical differences in the simulation result. Setting the environment variable, ``DEVSIM_NEW_SYMBOLIC``, will do a new symbolic factorization for each iteration.

This behavior may be controlled by using this option in the solve command

solve(symbolic_iteration_limit = -1)

where setting the value to ``-1`` will create a new symbolic factorization for all nonlinear iterations. Setting the value to a number greater than ``0`` will mark all iterations afterwards for reusing the previous symbolic factorization.

Reset Simulator

The ``reset_devsim`` command will clear all simulator data, so that a program restart is not necessary.

Build Infrastructure

LAPACK is Optional

When LAPACK functions are not available, it is now possible to use Eigen instead. BLAS is still required. It is up to the direct solver being used to determine necessary LAPACK functions.

Self Contained Build

The build infrastructure is being updated to support a small application build on different systems. For these builds, some commands are removed and SuperLU is the only available solver.

SuperLU Solver

For self contained builds, some commands are removed and SuperLU is the only available solver.

Citing DEVSIM

[CITATION.md](CITATION.md) has been updated with recent articles written about the simulator.

UMFPACK 5.1 is the new default when the Intel MKL is not available, making this the default for the macOS arm64 platform.

SuperLU is removed and no longer available as a solver.

Regression scripts were passing when there were numerical differences in the data diff comparison. This is now corrected and the regression results have been updated on all platforms.

For those building the software, the ``EXPLICIT_MATH_LOAD`` CMAKE option has been removed, so that the software is not directly linked to any math library.

The license text for the Apache 2.0 license has been replaced with the SPDX format of the license string. This ensures that the text can be used in a consistent manner across all source files.