Dnaapler

* Changes `Orffinder` to `Genefinder` to support `pyrodigal` v3.
* Updates dependency to `pyrodigal >=v3`.

* Minor release to fix an error with dnaapler all 38 thanks samnooij

* `dnaapler all` subcommand added thanks alexweisberg
* `dnaapler all` implements `--ignore` to ignore some contigs

* `dnaapler nearest` subcommand added
* `dnaapler bulk` subcommand added
* dnaA database filtered to keep only bona-file dnaA genes (i.e. GN=dnaA)
* Adds `-e` parameter to vary BLAST evalue if desired
* Adds `-a` autocomplete parameter if user wants to reorient sequences with mystery or nearest methods in case the BLAST based method fails

* Completely overhauled
* First stable released with pypi and conda
* `dnaapler chromosome` added
* `dnaapler custom` added
* `dnaapler mystery` added
* `dnaapler phage` added
* `dnaapler plasmid` added

* First release (conda only `conda install -c gbouras dnaapler`)