Dosma

Updates
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- Quantitative value (t1-rho, t2, t2*) visualizations are clipped at upper and lower bounds unique for each value to compare color maps. Upper and lower bounds are determined by tissue type (e.g. femoral cartilage) and quantitative value (e.g. t1-rho, t2, t2*)

- Add support for downsampling slice in z-dimension

Features:
- segment DESS images using unet model trained on OAI dataset - not segmentation accuracy has not been quantified
- register cubequant and cones sequence scans to DESS
- calculate T2, T1rho, and T2* using DESS, Cubequant, and Cones respectively
- 2D visualization maps for femoral cartilage
- save quantitative values to excel file

This pipeline supports image processing of DESS, Cubequant, and Cones imaging of MSK knee images