Dpdata

Important bug fixing
* sort by atom idx for dump (the type of atoms are aligned against the first frame) by njzjz in https://github.com/deepmodeling/dpdata/pull/388

Enhancement
* docs: update information about Python requirements by njzjz in https://github.com/deepmodeling/dpdata/pull/386

**Full Changelog**: https://github.com/deepmodeling/dpdata/compare/0.2.11...0.2.12

Enhancements:
- migrate from setup.py to pyproject.toml (366)
- drop Python 3.6 support (369)
- remove duplicated rot_lower_triangular (370)
- support max_steps for ase minimizer (372)
- add Optional to type hints when default is None (382)
- add pass step to GitHub Actions (384)

Bug fixings:
- fix(abacus): do not collect the unconverged structure for AIMD (368)
- fix codecov (373)
- fix bug in reading lammps trajs with random tid (377)
- fix issue 381. Raise runtime error when perturbing labeled system (383)

New features:
- 3dmol format for visualization in jupyter (357)
- add Minimizer plugin and System.minimize method (304)

Enhancements:
- replace deprecated np.int by int (340)
- docs: add authors section for credits (345)
- add unwrap support for lammps dump (339)
- cp2k: Update output.py (346)
- add option to ignore convergence check for `vasp/contcar` (355)

Bug fixings:
- fix abacus: transfer coords[-1] to numpy type in relax.py:`get_coords_from_log()` (343)
- fix DataError message (351)
- vasp: find the line index of viral in OUTCAR (352)
- bugfix: add pbc information from ase atoms (358)
- abacus: fix the judgement of convergence in abacus/scf (360)
- fix compatible with importlib_metadata 5.0.0 and Python 3.12 (362)

New features:
- add gaussian input format and driver (314)
- add correction method to MultiSystems (315)
- add stat module to compute MAE and RMSE (316 330 )
- add the support for abacus/relax (332)

Enhancements:
- drop conda in the test workflow (313)
- add dpdata cli docs (317)
- improve accuracy of sqm input coordinates (325)
- ouput position difference if cp.pos is inconsistent with cp.cel (327)
- add UT for to_system for abacus interface (334)

Bug fixings:
- Fix virial of cp2k (324)
- update input parameters in abacus.scf UT to be compatible with abacus >= 2.2 (335)

New features:
- add driver plugin system framework; migrate DP predict to DPDriver (277)
- add ML labeling option for vasp ml-aimd OUTCAR (282)
- add sqm driver (286)
- support converting ase.Atoms to System and LabeledSystem (290)
- add HybridDriver (292)
- add unlabeled abacus STRU read/dump interface (303)
- support reading xyz files (306)

Enhancements:
- fix reading SQM minimization output (288)
- refactor and optimize deepmd/hdf5 MultiSystems (291)
- add data type; refactor methods (299)
- adapt abacus/md interface to MD output without stress calculation. (301)
- dpdata driver <--> ase calculator (302)

Bug fixings:
- Fix DeprecationWarning in cp2k output parser (280)
- fix EnergyConversion example (284)
- fix sqm energy (283)
- fix DP driver energy shape (289)
- add empty __init__.py file to subpackages (295)
- fix docs in 286 (308)

Breaking changes:
- change default precision to float64
- ABACUS versions before 2.2 are not supported anymore.

New features:
- cli (265)

Enhancement:
- skip UTs when we do not have parmed, ase, pymatgen (249)
- breaking: adjust the default precision to float64 (261)
- add the deepmodeling banner to doc (254)
- add default cells when loading hdf5 data (262)
- support list for System indexing (264)
- add docstring to from/to method (266)
- adapt dpdata interface to ABACUS 2.2.0 (270)
- generate formats table in doc (269)
- batch replace 'except:' with 'except Exception:' (271)

Bug fixings:
- fix bug of duplicated atom names in vasp output (250)
- fix the vasp 6.3 outcar with ML forces (251)
- fix sqm/out forces (267)
- fixed issue 268 about qe/pw/scf (270)