Egcg-core

Latest version: v0.13

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0.6.5

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- Fix `get_project`

0.6.4

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- executors now retry their job submissions upon failure, up to three times
- some log messages from notifications have been reduced to debug
- `clarity.get_sample_gender` now checks for a 'Sex' UDF before checking 'Gender'
- in `rest_communication`, the building of requests has been fixed, as below:

In Communicator.get_content, we used to build a url manually via `api_url` and pass it to `_req`. This was because we had to cast dicts to strings manually:

python
where = {'this': 'that', 'other': None}
cast_where = '{"this":"that","other":null}'


However, the removal of spaces that this involved meant that any query for a field containing a space resulted in a bad query:

python
where = {'field_name': 'with spaces'}
cast_where = '{"field_name":"withspaces"}'


To fix this, we now pass the query string through [params](http://docs.python-requests.org/en/master/user/quickstart/passing-parameters-in-urls), and do Json serialisation on any dict params:

python
params = {'page': 1, 'where': {'this': 'that', 'other': None}}
query_string = '?page=1&where={"this": "that", "other": null}'

0.6.3

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0.6.2

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Emergency fix in move_dir where the destination file was named after the linked file instead of the link name
Downloads

0.6.1

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Improve util and error handling
Add function to retrieve project from LIMS API

0.6

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This version adds the ability to cancel currently running cluster jobs in executor. Also fixes a bug in util.move_dir.

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