Eggnog-mapper

Updated citation

- Updated novel families DB version and added novel families .pkl DB for annotation, which can be downloaded from `http://eggnog6.embl.de/download/novel_fams-1.0.1` or using `download_eggnog_data.py -D -F`
- Using the novel families search `-m novel_fams` now provides new annotation fields in `.emapper.annotations` output file.

* Bug on issue 432
* Bug when running <code>--decorate_gff yes</code> along with <code>--resume</code>

* Bug fixes (see Pull Requests), including compatibility with python 3.11.
* HMMER database downloaded using <code>download_eggnog_data.py</code> can be saved with a user specified name (see Pull Requests).
* Paths of input and output files should now accept white spaces.
* <code>--genepred prodigal</code> should accept now gzipped files as input, fixing issue 439.
* Added <code>--timeout_load_server</code> to control the number of attempts made to fire up a hmmpgmd server, also used with the <code>--usemem</code> option.

Added the option to search queries against the novel families identified at https://doi.org/10.1101/2022.01.26.477801

1 - Download the novel families diamond database: `download_eggnog_data.py -F`
2 - Search your queries against the novel families: `emapper.py -m novel_fams`

Bug fixes related with hmmer searches using hmmpgmd servers (--usemem option, etc). Fixes 390