Emase

Latest version: v0.10.16

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0.10.5

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* Added ``pull_alignments_from`` method in ``AlignmentPropertyMatrix`` class
* Added a script ``pull-out-unique-reads`` that unsets emase pseudo-alignments that are not uniquely aligning

0.10.3

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* Fixed a bug in ``run-emase`` on handling inbred (reference or one haplotype) alignments

0.10.2

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* Added ``get-common-alignments``: To compute intersection between each of paired ends

0.9.10

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* ``AlignmentMatrixFactory`` can handle unmapped reads

0.9.8

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* Fixed a bug in ``simulate-reads``: No more duplicate read ID's

0.9.7

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* Added ``create-hybrid``: Build hybrid target directly using custom transcripts
* Added ``simulate-reads``: Four nested models

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