~~~~~~~~~~~~~~~~~~~ * Added ``pull_alignments_from`` method in ``AlignmentPropertyMatrix`` class * Added a script ``pull-out-unique-reads`` that unsets emase pseudo-alignments that are not uniquely aligning
0.10.3
~~~~~~~~~~~~~~~~~~~ * Fixed a bug in ``run-emase`` on handling inbred (reference or one haplotype) alignments
0.10.2
~~~~~~~~~~~~~~~~~~~ * Added ``get-common-alignments``: To compute intersection between each of paired ends
0.9.10
~~~~~~~~~~~~~~~~~~~ * ``AlignmentMatrixFactory`` can handle unmapped reads
0.9.8
~~~~~~~~~~~~~~~~~~ * Fixed a bug in ``simulate-reads``: No more duplicate read ID's
0.9.7
~~~~~~~~~~~~~~~~~~ * Added ``create-hybrid``: Build hybrid target directly using custom transcripts * Added ``simulate-reads``: Four nested models