Ensembl-genomio

Latest version: v1.6.1

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1.6.1

What's Changed
* adding display name for the main site to metaconf generator by vsitnik in https://github.com/Ensembl/ensembl-genomio/pull/460
* Add automatic NOTICE update workflow by JAlvarezJarreta in https://github.com/Ensembl/ensembl-genomio/pull/459
* BRC4_genome_loader_conf pre_115 fixes by vsitnik in https://github.com/Ensembl/ensembl-genomio/pull/462
* week long resource classes and rc_class params for BRC4_genome_loader by vsitnik in https://github.com/Ensembl/ensembl-genomio/pull/463
* using proper "organism.production_name" metakey in the config generator by vsitnik in https://github.com/Ensembl/ensembl-genomio/pull/464
* adding BEETLEBASE to the ignored external db list by vsitnik in https://github.com/Ensembl/ensembl-genomio/pull/465
* Ignore UTRs of genes by JAlvarezJarreta in https://github.com/Ensembl/ensembl-genomio/pull/466
* a gff_metaparser config patch file to disable cds/ID substitution with the protein_id by vsitnik in https://github.com/Ensembl/ensembl-genomio/pull/467
* Remove old entry point left by mistake by JAlvarezJarreta in https://github.com/Ensembl/ensembl-genomio/pull/468


**Full Changelog**: https://github.com/Ensembl/ensembl-genomio/compare/v1.6.0...v1.6.1

1.6.0

What's Changed
* Add ps for genomio container by ens-LCampbell in https://github.com/Ensembl/ensembl-genomio/pull/454
* Adding CICD trigger to allow non versioned release genomio container builds by ens-LCampbell in https://github.com/Ensembl/ensembl-genomio/pull/455
* Update commit tag format when rebuilding docker containers by JAlvarezJarreta in https://github.com/Ensembl/ensembl-genomio/pull/457
* Sync add-version with main (updated CICD container trigger) by ens-LCampbell in https://github.com/Ensembl/ensembl-genomio/pull/458
* Add --version to every entry point by JAlvarezJarreta in https://github.com/Ensembl/ensembl-genomio/pull/456


**Full Changelog**: https://github.com/Ensembl/ensembl-genomio/compare/v1.5.0...v1.6.0

1.5.0

What's Changed
* Update database.factory.main() function to test all its contents by JAlvarezJarreta in https://github.com/Ensembl/ensembl-genomio/pull/449
* Update GenomIO to avoid too many positional arguments by JAlvarezJarreta in https://github.com/Ensembl/ensembl-genomio/pull/450
* Add new module for DB meta data querying by ens-LCampbell in https://github.com/Ensembl/ensembl-genomio/pull/451
* Refactor genome_metadata dump module by ens-LCampbell in https://github.com/Ensembl/ensembl-genomio/pull/453


**Full Changelog**: https://github.com/Ensembl/ensembl-genomio/compare/v1.4.0...v1.5.0

1.4.0

What's Changed
* Remove patch build nextflow modules by JAlvarezJarreta in https://github.com/Ensembl/ensembl-genomio/pull/444
* Remove patch_build scripts by Dishalodha in https://github.com/Ensembl/ensembl-genomio/pull/446
* Use parents feature instead of loop for subparsers by JAlvarezJarreta in https://github.com/Ensembl/ensembl-genomio/pull/447
* Bugfix and output param name change by ens-LCampbell in https://github.com/Ensembl/ensembl-genomio/pull/448


**Full Changelog**: https://github.com/Ensembl/ensembl-genomio/compare/v1.3.2...v1.4.0

1.3.2

What's Changed
* Manifest tests by MatBarba in https://github.com/Ensembl/ensembl-genomio/pull/434
* Old brc4 minor fixes by MatBarba in https://github.com/Ensembl/ensembl-genomio/pull/443
* Refactor assembly.status module by JAlvarezJarreta in https://github.com/Ensembl/ensembl-genomio/pull/433
* Reconfigure how containers are used in nextflow pipelines by ens-LCampbell in https://github.com/Ensembl/ensembl-genomio/pull/442


**Full Changelog**: https://github.com/Ensembl/ensembl-genomio/compare/V1.3.1...v1.3.2

1.3.1

What's Changed
* Fix for mkdocs deployment by ens-LCampbell in https://github.com/Ensembl/ensembl-genomio/pull/440
* Bugfix mkdocs, minor version change (v1.3.1) by ens-LCampbell in https://github.com/Ensembl/ensembl-genomio/pull/441


**Full Changelog**: https://github.com/Ensembl/ensembl-genomio/compare/v1.3.0...V1.3.1

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