Ensembl-py

What's Changed
* Fix SQLalchemy compatibility warnings by MatBarba in https://github.com/Ensembl/ensembl-py/pull/76
* Remove ensembl.utils and update documentation by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/73


**Full Changelog**: https://github.com/Ensembl/ensembl-py/compare/1.4.2...v2.0.0

What's Changed
* Migrate from Travis to GitLab CI/CD by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/51
* Require DIND runners by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/52
* Apply black, pylint and mypy suggestions by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/53
* Update version by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/54
* Porting of current ensembl.genomio pytest fixtures to ensembl-py (redo) by ens-LCampbell in https://github.com/Ensembl/ensembl-py/pull/56
* Update repository following new features by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/57
* Small bug fixes and add missing environment variable $USER by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/58
* Use the correct username by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/59
* Use MySQL root user to have write access to server by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/61
* Move Sphinx to mkdocs for documentation generation by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/60
* CI/CD workflow refinement and improvements by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/66
* Update python-dotenv requirement from ~=0.19.2 to ~=1.0.1 by dependabot in https://github.com/Ensembl/ensembl-py/pull/62
* Update mysqlclient requirement from <2.2.0,>=1.4.6 to >=1.4.6,<2.3.0 by dependabot in https://github.com/Ensembl/ensembl-py/pull/64
* Bump pytest-dependency from 0.5.1 to 0.6.0 by dependabot in https://github.com/Ensembl/ensembl-py/pull/65
* Merge pytest and coverage by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/67
* Bugfix: add alternatives to fixture or raise exception by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/68
* Bugfix: search for the right codebase root by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/69
* Bugfix: drop src/python from path components by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/70
* Grab all submodules, not only __init__.py by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/71
* Update GitLab CI/CD by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/72

New Contributors
* ens-LCampbell made their first contribution in https://github.com/Ensembl/ensembl-py/pull/56
* dependabot made their first contribution in https://github.com/Ensembl/ensembl-py/pull/62

**Full Changelog**: https://github.com/Ensembl/ensembl-py/compare/1.3.0...1.4.2

What's Changed
* Annual copyright update 2024 by marcoooo in https://github.com/Ensembl/ensembl-py/pull/42
* Fix escape char by MatBarba in https://github.com/Ensembl/ensembl-py/pull/44
* Update where declarative_base is imported from by MatBarba in https://github.com/Ensembl/ensembl-py/pull/45
* updated case sensitivity in table.sql parsing. by marcoooo in https://github.com/Ensembl/ensembl-py/pull/43
* Adding xref db models by TamaraNaboulsi in https://github.com/Ensembl/ensembl-py/pull/46
* Add archive file utils by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/48
* Remove tmp_dir fixture as pytest offers tmp_path since v6.2 by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/47
* Minor fix by TamaraNaboulsi in https://github.com/Ensembl/ensembl-py/pull/49

New Contributors
* TamaraNaboulsi made their first contribution in https://github.com/Ensembl/ensembl-py/pull/46

**Full Changelog**: https://github.com/Ensembl/ensembl-py/compare/1.2.2...1.3.0

What's Changed
* Annual copyright update 2024 by marcoooo in https://github.com/Ensembl/ensembl-py/pull/42
* Fix escape char by MatBarba in https://github.com/Ensembl/ensembl-py/pull/44
* Update where declarative_base is imported from by MatBarba in https://github.com/Ensembl/ensembl-py/pull/45
* updated case sensitivity in table.sql parsing. by marcoooo in https://github.com/Ensembl/ensembl-py/pull/43


**Full Changelog**: https://github.com/Ensembl/ensembl-py/compare/1.2.2...1.2.3a1

What's Changed
* Revert behaviour to ensure optional args are available in the Namespace by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/36
* Explicit default log_level for the group by MatBarba in https://github.com/Ensembl/ensembl-py/pull/38
* Added engine_extra params to init DBConnection by marcoooo in https://github.com/Ensembl/ensembl-py/pull/37
* Add init_logging_with_args() wrapper function by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/39
* Update version accordingly by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/40
* Restrict mysqlclient version by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/41


**Full Changelog**: https://github.com/Ensembl/ensembl-py/compare/1.2.1a1...1.2.2

What's Changed
* Add logging arguments method to ease usage of logging system by JAlvarezJarreta in https://github.com/Ensembl/ensembl-py/pull/35


**Full Changelog**: https://github.com/Ensembl/ensembl-py/compare/1.2.0...1.2.1a1