Entelecheia

Feature

* **test_docs:** Add test for generating reference docs ([`a0f63d1`](https://github.com/entelecheia/hyfi/commit/a0f63d1ea86181b5883f5c4398a986128bc1d6bc))
* **docs:** Add detailed DocGenerator class description ([`af50c4c`](https://github.com/entelecheia/hyfi/commit/af50c4ccd8096aa7c15a6ae4954e7c8aec372542))
* **docs:** Add reference for run, runner, and utils ([`467d1b9`](https://github.com/entelecheia/hyfi/commit/467d1b9e9241d83cff7bc6bce662ef0fbbd16baa))
* **docs:** Add reference for cached_path in hyfi ([`6f44843`](https://github.com/entelecheia/hyfi/commit/6f44843abafbd2ea99fc066818ee6c14ace04233))
* **docs:** Add new workflow reference page ([`07a5742`](https://github.com/entelecheia/hyfi/commit/07a5742374ad01459512a85400220891eb40a60f))
* **docs:** Add reference_docs_dirname and exclude_references fields ([`e69e839`](https://github.com/entelecheia/hyfi/commit/e69e839e342d65c0e4c22de12e8e12b3e0a2e77d))
* **docs:** Add reference_docs_dir property and related methods to DocGenerator class ([`dd597b9`](https://github.com/entelecheia/hyfi/commit/dd597b94461f83d1466739fd44d6b42b1a2f16e8))
* **docs:** Add variables config documentation ([`9547c34`](https://github.com/entelecheia/hyfi/commit/9547c34c47b37443abd93969dd7a07f9156d2271))
* **docs:** Add hydra config documentation ([`8be7b89`](https://github.com/entelecheia/hyfi/commit/8be7b89f3e82999e49e80ce7133d6a294450b324))
* **docs:** Add __project__.yaml section to env.md ([`54da091`](https://github.com/entelecheia/hyfi/commit/54da091f3ccbc2758f44152b2eda0752bdd9d1e6))
* **docs:** Add new configs documentation ([`0236581`](https://github.com/entelecheia/hyfi/commit/023658186b05e98cc3aa74fef55b4677a6159183))
* **tests:** Add tests for DocGenerator in hyfi composer ([`25b8238`](https://github.com/entelecheia/hyfi/commit/25b823879db2e019cf7267bdfbd0d7d4ae99ffba))
* **docs:** Add automatic documentation generation for configs and models ([`081bb2d`](https://github.com/entelecheia/hyfi/commit/081bb2db504833b97e191ddef8a88202fd3ac62e))
* **composer:** Add DocGenerator to module exports ([`9df4fe6`](https://github.com/entelecheia/hyfi/commit/9df4fe6ff390aa3d1afe02c863a500b8f27fc565))
* **docs:** Initialize configuration for docs ([`bee8ca0`](https://github.com/entelecheia/hyfi/commit/bee8ca04704e309f65c49730243eec733e3c2772))

Feature

* **hyfi:** Add new configuration file with environment variables ([`e4acb14`](https://github.com/entelecheia/hyfi/commit/e4acb1490444ebd1d7d81a03b23adcbae00fac94))
* **hyfi/env:** Add new env module ([`82ff306`](https://github.com/entelecheia/hyfi/commit/82ff3065b904ff6bba62f8d62edd6fa0e3512205))

Feature

* **test_model:** Add InnerTestModel to tests ([`e107be4`](https://github.com/entelecheia/hyfi/commit/e107be4d7d181e9d2022bf3585fffec95c8c205b))
* **composer:** Add variable overrides and debug message ([`32cdefe`](https://github.com/entelecheia/hyfi/commit/32cdefea79d88d58d21b6b4d307898e5306c0667))
* **config:** Add new test vars configuration file ([`0115fe9`](https://github.com/entelecheia/hyfi/commit/0115fe9c1dcc0acd2b67b89a95aa12f793b420bf))
* **config:** Add new InnerTestModel configuration ([`c89dc67`](https://github.com/entelecheia/hyfi/commit/c89dc67c19cf3e2ec4418158ab2ba33a4752c5ff))
* **main:** Add GlobalVariables class to handle global variables ([`7e4ef1f`](https://github.com/entelecheia/hyfi/commit/7e4ef1fd9b3b4774064e49035baa1fb9dfd83345))
* **hyfi/main/config:** Add globals optional ConfigType ([`f2c8fae`](https://github.com/entelecheia/hyfi/commit/f2c8faecd353bfcb57a4017b10f50aadae0f6d06))
* **hyfi:** Restructure global configuration files ([`38879a4`](https://github.com/entelecheia/hyfi/commit/38879a4ff320527b3641008865d6acb48b17cf27))
* **config:** Add global init to defaults ([`29e7e4f`](https://github.com/entelecheia/hyfi/commit/29e7e4fbc84dfe225017abf207b6f927715c34f5))
* **hyfi/conf/global:** Add new configuration file ([`17c7c2b`](https://github.com/entelecheia/hyfi/commit/17c7c2b56a166f14b60a4b64fe012a8f02dfde17))

Fix

* **core:** Use caller's package name in plugin loading ([`04156be`](https://github.com/entelecheia/hyfi/commit/04156be46de0ec6794165f6a5944bddaed85e340))
* **utils:** Improve module name inspection methods ([`a638659`](https://github.com/entelecheia/hyfi/commit/a638659d103651412b2a489d4819f07ecde43c4c))
* **core:** Change plugins type to Dict and rename method, enhance plugins retrieval from package name ([`5702d87`](https://github.com/entelecheia/hyfi/commit/5702d8746c35c3da1fc8fd91c4ed67bab38a6a12))
* **batch:** Add default value for batch_name ([`94d3898`](https://github.com/entelecheia/hyfi/commit/94d3898f2757c9939d42c3c111ffe066573a9030))

Fix

* **hyfi/main:** Implement check for instantiatable config and run if present ([`8124301`](https://github.com/entelecheia/hyfi/commit/8124301dc93e66fb7045415bbd6a84fc60275f23))

Documentation

* **README:** Add citation details, update zenodo badge link ([`b13feb8`](https://github.com/entelecheia/hyfi/commit/b13feb8095b75dbba4160e6a86c5be33e2bf7977))
* **README:** Add support for plugins section ([`e161b90`](https://github.com/entelecheia/hyfi/commit/e161b903f96edaf70deae38007321af822f5bf50))
* **README:** Add Zenodo DOI badge ([`9d957aa`](https://github.com/entelecheia/hyfi/commit/9d957aab1e433b6413d6e42c2a8701b75ba17306))

Fix

* **mkdocs.yaml:** Add social links to github and linkedin, enhance copyright statement with html link ([`42277d7`](https://github.com/entelecheia/hyfi/commit/42277d7872b6a7827bf88868d9a927f14a96ef18))

Documentation

* **README:** Add citation section ([`25d7172`](https://github.com/entelecheia/hyfi/commit/25d7172fdcb1803f08d2d005cd9f204646a497e1))
* Add new yaml configurations to pipe.md and run.md ([`e0cd530`](https://github.com/entelecheia/hyfi/commit/e0cd530a258557fec5d62b3c1c731e078d95f622))