Epytope

`Added`

- [93](https://github.com/KohlbacherLab/epytope/pull/93) Added NetMHCIIpan version 4.2 interface [#92](https://github.com/KohlbacherLab/epytope/issues/92)
- [96](https://github.com/KohlbacherLab/epytope/pull/96) Added NetMHCIIpan version 4.3 interface [#95](https://github.com/KohlbacherLab/epytope/issues/95)

`Changed`

`Fixed`

- [93](https://github.com/KohlbacherLab/epytope/pull/93) Fixed length restriction of NetMHCIIpan interfaces [#91](https://github.com/KohlbacherLab/epytope/issues/91)

`Added`

`Changed`

- [85](https://github.com/KohlbacherLab/epytope/pull/85) Pinned pandas version >= 1.3.5 as requested by e-dorigatti [#84](https://github.com/KohlbacherLab/epytope/issues/84).

`Fixed`

- [83](https://github.com/KohlbacherLab/epytope/pull/83) Fixed erroneous mouse allele parsing for PSSM predictors [#82](https://github.com/KohlbacherLab/epytope/issues/82)

epytope` is the successor project of [`FRED2`](https://github.com/FRED-2/Fred2), which was renamed to a more versioning friendly base name.

`Added`

`Changed`

- Switch from [PyVCF](https://github.com/jamescasbon/PyVCF) to [PyVCF3](https://github.com/dridk/PyVCF3) as dependency

`Fixed`


See [CHANGELOG](https://github.com/KohlbacherLab/epytope/blob/main/CHANGELOG.md) for the complete list of changes.

epytope` is the successor project of [`FRED2`](https://github.com/FRED-2/Fred2), which was renamed to a more versioning friendly base name.

`Added`

- [74](https://github.com/KohlbacherLab/epytope/pull/74) - Add function to `Peptide` class to determine if peptide originates from a variant

`Changed`

- [63](https://github.com/KohlbacherLab/epytope/pull/63) - Outsource supported alleles of prediction tools [#61](https://github.com/KohlbacherLab/epytope/issues/61)
- [69](https://github.com/KohlbacherLab/epytope/pull/69) - Improve `Ensembl` BioMart adapter [#57](https://github.com/KohlbacherLab/epytope/issues/57)

`Fixed`

- [73](https://github.com/KohlbacherLab/epytope/pull/73) - Fix `NetMHCII 4.0` parser [#72](https://github.com/KohlbacherLab/epytope/issues/72)



See [CHANGELOG](https://github.com/KohlbacherLab/epytope/blob/main/CHANGELOG.md) for the complete list of changes.

Second release of `epytope`. `epytope` is the successor project of [`FRED2`](https://github.com/FRED-2/Fred2), which was renamed to a more versioning friendly base name.

`Added`

- [58](https://github.com/KohlbacherLab/epytope/pull/58) - Add check for `BioMart` transcript sequence availability [#55](https://github.com/KohlbacherLab/epytope/issues/55)
- [59](https://github.com/KohlbacherLab/epytope/pull/59) - Add interface for `NetMHCpan 4.1` [#56](https://github.com/KohlbacherLab/epytope/issues/56)
- [66](https://github.com/KohlbacherLab/epytope/pull/66) - Add interface for `NetMHCIIpan 4.1` [#65](https://github.com/KohlbacherLab/epytope/issues/65)

`Changed`

- [62](https://github.com/KohlbacherLab/epytope/pull/62) - Update the supported alleles of `syfpeithi` [#60](https://github.com/KohlbacherLab/epytope/issues/60)

`Fixed`

- [53](https://github.com/KohlbacherLab/epytope/pull/53) - Fix `ANN` predictor results [#52](https://github.com/KohlbacherLab/epytope/issues/52)


See [CHANGELOG](https://github.com/KohlbacherLab/epytope/blob/main/CHANGELOG.md) for the complete list of changes.

Initial release of `epytope`. `epytope` is the successor project of [`FRED2`](https://github.com/FRED-2/Fred2), which was renamed to a more versioning friendly base name.

`Added`

- [6](https://github.com/KohlbacherLab/epytope/pull/6) - Add CI for external tools
- [42](https://github.com/KohlbacherLab/epytope/pull/42) - Add new `Syfpeithi` matrices
- [46](https://github.com/KohlbacherLab/epytope/pull/46) - Add support for `NetMHCII 2.3` and `NetMHCIIpan 4.0`

`Changed`

- [1](https://github.com/KohlbacherLab/epytope/pull/1) - Switch CI/CD from Travis to GitHub Actions
- [9](https://github.com/KohlbacherLab/epytope/pull/9) - Initial `Python 2` to `Python 3` conversion based on 2to3conv
- [23](https://github.com/KohlbacherLab/epytope/pull/23) - Rename the package from `FRED-2` to `epytope`
- [42](https://github.com/KohlbacherLab/epytope/pull/42) - Extend `EpitopePredictionResult` structure to store `rank`-based scores

`Fixed`

- [46](https://github.com/KohlbacherLab/epytope/pull/46) - Fix issues with MHC class-II `CombinedAlleles` [#45](https://github.com/KohlbacherLab/epytope/issues/45)
- [46](https://github.com/KohlbacherLab/epytope/pull/46) - Do not override `Allele` objects [#38](https://github.com/KohlbacherLab/epytope/issues/38)


See [CHANGELOG](https://github.com/KohlbacherLab/epytope/blob/main/CHANGELOG.md) for the complete list of changes.