Eva-sub-cli

What's Changed
* EVA-3566: Clean up validation output directory by apriltuesday in https://github.com/EBIvariation/eva-sub-cli/pull/36
* EVA-3563 remove the option of providing csv mapping through command line by nitin-ebi in https://github.com/EBIvariation/eva-sub-cli/pull/37
* EVA-3525 update validation report by nitin-ebi in https://github.com/EBIvariation/eva-sub-cli/pull/39
* EVA-3524: Catch and report HTTP errors by apriltuesday in https://github.com/EBIvariation/eva-sub-cli/pull/38
* EVA-3590 update initial check for validation required or not by nitin-ebi in https://github.com/EBIvariation/eva-sub-cli/pull/40
* EVA-3581 Add option to see all errors of all categories for a sample by nitin-ebi in https://github.com/EBIvariation/eva-sub-cli/pull/41
* EVA-3587: Semantic metadata checks by apriltuesday in https://github.com/EBIvariation/eva-sub-cli/pull/43
* EVA-3624: Metadata checks on existing BioSamples by apriltuesday in https://github.com/EBIvariation/eva-sub-cli/pull/44
* EVA-3615 - Add git commit to version and version to reports by tcezard in https://github.com/EBIvariation/eva-sub-cli/pull/47
* EVA-3227 Add file size to metadata Json by nitin-ebi in https://github.com/EBIvariation/eva-sub-cli/pull/46
* EVA-3585 Cli documentation by Dona094 in https://github.com/EBIvariation/eva-sub-cli/pull/45
* EVA-3620 Report metadata errors for Json directly when no spreadsheet used by nitin-ebi in https://github.com/EBIvariation/eva-sub-cli/pull/48
* EVA-3622 - Semantic validation with Biosamples validate by tcezard in https://github.com/EBIvariation/eva-sub-cli/pull/49
* EVA-3628 Fixes and Improvements by tcezard in https://github.com/EBIvariation/eva-sub-cli/pull/50
* EVA-3638 - Fix reporting of assembly check errors by apriltuesday in https://github.com/EBIvariation/eva-sub-cli/pull/51
* EVA-3636: Fixes for semantic metadata validation by apriltuesday in https://github.com/EBIvariation/eva-sub-cli/pull/52
* EVA-3635 - Fixes from Testing by tcezard in https://github.com/EBIvariation/eva-sub-cli/pull/53
* EVA-3263 - Shallow validation by tcezard in https://github.com/EBIvariation/eva-sub-cli/pull/54
* EVA-3564 - Simplify metadata conversion and validation by apriltuesday in https://github.com/EBIvariation/eva-sub-cli/pull/55
* Remove minify-html by tcezard in https://github.com/EBIvariation/eva-sub-cli/pull/57
* EVA-3659 - Updates for testing session by apriltuesday in https://github.com/EBIvariation/eva-sub-cli/pull/56
* EVA-3663_cli_Documentation by Dona094 in https://github.com/EBIvariation/eva-sub-cli/pull/59

New Contributors
* Dona094 made their first contribution in https://github.com/EBIvariation/eva-sub-cli/pull/45

**Full Changelog**: https://github.com/EBIvariation/eva-sub-cli/compare/v0.3...v0.4

What's Changed
* EVA-3438 - Lower log level by tcezard in https://github.com/EBIvariation/eva-sub-cli/pull/25
* EVA-3504 - Add transcriptomics to template and schema for experiment type by tcezard in https://github.com/EBIvariation/eva-sub-cli/pull/24
* EVA-3517 - Issues from test run by apriltuesday in https://github.com/EBIvariation/eva-sub-cli/pull/26
* Fix upload by apriltuesday in https://github.com/EBIvariation/eva-sub-cli/pull/27
* Updates from testing by apriltuesday in https://github.com/EBIvariation/eva-sub-cli/pull/28
* EVA-3435 - Retrieve INSDC accession based on FASTA file and compare against metadata by apriltuesday in https://github.com/EBIvariation/eva-sub-cli/pull/29
* EVA-3522 - Add assembly check error to HTML report. by tcezard in https://github.com/EBIvariation/eva-sub-cli/pull/32
* EVA-3523: Propagate metadata conversion errors to top-level validation report by apriltuesday in https://github.com/EBIvariation/eva-sub-cli/pull/31
* EVA-3553 - Calculate md5 of VCF files and add them to the JSON metadata by tcezard in https://github.com/EBIvariation/eva-sub-cli/pull/30
* EVA - 3551 - Upload json to submit by tcezard in https://github.com/EBIvariation/eva-sub-cli/pull/33
* EVA-3557 - Review spreadsheet template by tcezard in https://github.com/EBIvariation/eva-sub-cli/pull/35
* EVA-3565 - Add Version by tcezard in https://github.com/EBIvariation/eva-sub-cli/pull/34


**Full Changelog**: https://github.com/EBIvariation/eva-sub-cli/compare/v0.2...v0.3

What's Changed
* EVA-3478 - Validation runs only when necessary by tcezard in https://github.com/EBIvariation/eva-sub-cli/pull/18
* EVA-3459 - New script and tests to check if sequences in fasta are from INSDC by tcezard in https://github.com/EBIvariation/eva-sub-cli/pull/19
* EVA-3488 - Remove requirement for assembly report / other refactor by tcezard in https://github.com/EBIvariation/eva-sub-cli/pull/20
* EVA-3502 - Allow the submission-ws URL to be updated by tcezard in https://github.com/EBIvariation/eva-sub-cli/pull/22
* EVA-3225 - Add native execution for validation and refactor by apriltuesday in https://github.com/EBIvariation/eva-sub-cli/pull/23
* EVA-3439 - Conda build by apriltuesday in https://github.com/EBIvariation/eva-sub-cli/pull/21


**Full Changelog**: https://github.com/EBIvariation/eva-sub-cli/compare/v0.1...v0.2