Ci
* ci(Travis-CI): changed supported versions and location of version string ([`397deca`](https://github.com/MedVisBonn/eyepy/commit/397decabbe64e6ab812de9aa8adc1450d17ae1e7))
* ci: add changed files before commiting ([`8e1cb24`](https://github.com/MedVisBonn/eyepy/commit/8e1cb24a6bc59f0cf1f986da39d36e90c98e11b0))
Documentation
* docs(readme): added eyepy logo to readme.rst and removed readme.md ([`bc3e19d`](https://github.com/MedVisBonn/eyepy/commit/bc3e19d3120fa9a5329a6ad67ec9632a735d1d6e))
Fix
* fix(.travis.yml): another fix ([`79e3332`](https://github.com/MedVisBonn/eyepy/commit/79e33325605f87205a1797cb232328ef8698c21d))
* fix(.travis.yml): fixed yaml problem ([`28eac5e`](https://github.com/MedVisBonn/eyepy/commit/28eac5e62684ce749cd45845465bc0fa6e443d2c))
* fix(ci-testing): test whether a fix triggers the travic ci build
no significant changes ([`718e9ee`](https://github.com/MedVisBonn/eyepy/commit/718e9ee612e3345c51e57036f9b51c15c5e1a9b4))
Refactor
* refactor(registration): Added rigid registration of multimodal images based on mean phase images and HOG features. Also added an examplary notebook ([`7ce9ebd`](https://github.com/MedVisBonn/eyepy/commit/7ce9ebdd1717ed3b171f132b13d9e452b43a6cb8))
* refactor(project): added 2D rigid registration ([`67f5908`](https://github.com/MedVisBonn/eyepy/commit/67f59085b8fad04c9601a045ce9c327e4658fc22))
Style
* style: removed index.html files ([`81bf883`](https://github.com/MedVisBonn/eyepy/commit/81bf883de614a7488aeec843d657f8c3c70faab7))
Unknown
* Another try ([`a450ec6`](https://github.com/MedVisBonn/eyepy/commit/a450ec61db05a9faf0b1bea5bf17cba0858596e2))
* Changed project name from eyepy to eyepie for PyPi ([`64313c4`](https://github.com/MedVisBonn/eyepy/commit/64313c4429bc8383deb2461369498998f62201ec))
* Setting up pypi upload ([`88a6a33`](https://github.com/MedVisBonn/eyepy/commit/88a6a3365e684aa8da93487a7ad1b097de80b2e4))
* work in progress ([`b6833a1`](https://github.com/MedVisBonn/eyepy/commit/b6833a1d04eed7cf5208a1f0abfcd6ac40845843))
* Added annotation comparison ([`1bb8f33`](https://github.com/MedVisBonn/eyepy/commit/1bb8f3388ef376335169d1bcd388cd1898ec1fbb))
* small changes ([`ae3b464`](https://github.com/MedVisBonn/eyepy/commit/ae3b4644fd91fa6c4fc6db0ca639513f16f137e7))
* unknown ([`b518e0c`](https://github.com/MedVisBonn/eyepy/commit/b518e0ce1047b0c18f7c5e4f4e92f0d5fdc966c1))
* Fixed drusen filters ([`c265d6c`](https://github.com/MedVisBonn/eyepy/commit/c265d6cafb1ffbad37471f3a3e902ce789e0486a))
* Severall small fixes and improvements ([`161ecb4`](https://github.com/MedVisBonn/eyepy/commit/161ecb45f0660465cbfea41a89bda3c57be32fe1))
* many small improvements; drusen computation now in 4s instead of 90s ([`cbae8db`](https://github.com/MedVisBonn/eyepy/commit/cbae8db2ebf17eaad9828cbe82ba354365a8b73e))
* layer ploting with region works ([`fb67ede`](https://github.com/MedVisBonn/eyepy/commit/fb67ede4a94fd4914fdacda99f53bd01d49310ba))
* minor change ([`a1fa0bb`](https://github.com/MedVisBonn/eyepy/commit/a1fa0bb0fca5f19c55b825ef9b47ac5c0d0f2460))
* default Annotation for B-Scan ([`758d23f`](https://github.com/MedVisBonn/eyepy/commit/758d23fdf82e7e6d7f48f9e2451cd6b171c79351))
* some changes ([`8935ab4`](https://github.com/MedVisBonn/eyepy/commit/8935ab4719b21974e2eaf662b3eddd1dbcb1d9a9))
* Default empty LayerAnnotation works ([`72a6a43`](https://github.com/MedVisBonn/eyepy/commit/72a6a43322c087eadb308cd64fedb1ffc4da62ce))
* fix the layer annotation fix :/ ([`fa5ee81`](https://github.com/MedVisBonn/eyepy/commit/fa5ee81cd690ff35e08b3cb15a999c3bea4daa9e))
* Added default empty layer annotation and fixed Oct.layer ([`5c8a395`](https://github.com/MedVisBonn/eyepy/commit/5c8a3957f2fc1b60cb49e115cc0cff1845124dd5))
* Assume square area for OCT if no enface and or no layer positions are given; Enabled changing the layer annotations ([`5e244f0`](https://github.com/MedVisBonn/eyepy/commit/5e244f096b48eb0191d048272fa299200be002f5))
* Added name to Bscan. If B-Scans are save as individual files, this is the respective filename, else it becomes a string version of the B-Scan index ([`0b09ebe`](https://github.com/MedVisBonn/eyepy/commit/0b09ebe5deb1d8f366b788eb96bea3ac244b1ec8))
* Merge remote-tracking branch &39;public/master&39; ([`dd352c6`](https://github.com/MedVisBonn/eyepy/commit/dd352c65e855cbab2b75e7c2a1d14e732560a9cf))
* added layer_indices property to Bscan ([`bd4f669`](https://github.com/MedVisBonn/eyepy/commit/bd4f6691b3431bbdc2dd158c9c11934492240167))
* Merge remote-tracking branch &39;public/master&39; ([`64db876`](https://github.com/MedVisBonn/eyepy/commit/64db8764c99ee13c4caa7c583f0496c36a990cd6))
* Imports fixed ([`cb2759a`](https://github.com/MedVisBonn/eyepy/commit/cb2759a1e432f2c492846a561049b7302a811251))
* Merge remote-tracking branch &39;public/master&39;
Conflicts:
eyepy/core/base.py ([`1b4de44`](https://github.com/MedVisBonn/eyepy/commit/1b4de44c6dd9734d99ad811071a17da5bcd97904))
* Rewrite Heyex vol and xml readers. Clean up ([`f97da6e`](https://github.com/MedVisBonn/eyepy/commit/f97da6ea8509b4c21484e53c956683f63aba098a))
* Merge remote-tracking branch &39;public/master&39;
Conflicts:
eyepy/core/octbase.py
eyepy/io/heyex/he_xml.py ([`965bc45`](https://github.com/MedVisBonn/eyepy/commit/965bc456b5f5a53365874486f14e62f98b01e6c9))
* minor fix ([`b1b97f3`](https://github.com/MedVisBonn/eyepy/commit/b1b97f3429a08635d54b6acc82704848ed7a7cbc))
* minor fix ([`266f837`](https://github.com/MedVisBonn/eyepy/commit/266f837ce5aa508f3e6ab51e106b766e42e915f3))
* added drusen depth filter ([`8acd827`](https://github.com/MedVisBonn/eyepy/commit/8acd82757a0482785194e81f6d458f76dca9de08))
* bumbed version ([`5a1000a`](https://github.com/MedVisBonn/eyepy/commit/5a1000a462d8484409c20384fa01436c25edff87))
* Added drusen saving in data_path/.eyepy folder. Added function to recompute drusen if needed with a custom drusenfinder ([`40ed65d`](https://github.com/MedVisBonn/eyepy/commit/40ed65d946db3e630294a3a99165aea89da506ef))
* Merge remote-tracking branch &39;origin/master&39; into dev
Conflicts:
eyepy/core/drusen.py ([`69a6f71`](https://github.com/MedVisBonn/eyepy/commit/69a6f712a71a1690ce3ea6b55584bcb877151ac1))
* Drusen depth filter added ([`d33f0d6`](https://github.com/MedVisBonn/eyepy/commit/d33f0d66a4d6810ce5d33a73fc8de02936ad3ad3))
* layer_indices and enface filename ([`2ee6f41`](https://github.com/MedVisBonn/eyepy/commit/2ee6f41470ad75be07e420d81e4d4c62dd5e1a06))
* Work in progress, adding reading functionallity for bscan only folders ([`8d859c0`](https://github.com/MedVisBonn/eyepy/commit/8d859c0b433c10a81ae80ad6e1b31828c54f276b))
* Changed Repository ([`5e0aa32`](https://github.com/MedVisBonn/eyepy/commit/5e0aa327684a93da006fb24242a33867eda3d8b5))
* Merge branch &39;dev&39;
Conflicts:
eyepy/preprocess/loggabor.py ([`1368604`](https://github.com/MedVisBonn/eyepy/commit/13686042b3d0579963c45a6f3e739a5d529f6025))
* Added DefaultEyeQuantifier and improved plotting ([`a00b25a`](https://github.com/MedVisBonn/eyepy/commit/a00b25a6602771b060661ca6e9d4e12c056cf8b7))
* Minor fixes and clean up ([`2ce4962`](https://github.com/MedVisBonn/eyepy/commit/2ce4962a7f1b01d88b6f07e418fd454aba503b90))
* Removed code duplication ([`c02d2dd`](https://github.com/MedVisBonn/eyepy/commit/c02d2dd8729ea89dd7fb7a698a6149c560a8ee41))
* Added EyeQuantifier and DefaultEyeQuantifier for standard drusen quantification ([`6b33b6f`](https://github.com/MedVisBonn/eyepy/commit/6b33b6fd4a034af55705baeae41fce2103976470))
* Added loader for sample data ([`451586d`](https://github.com/MedVisBonn/eyepy/commit/451586daa68b2bebe607f0f064013c73575c9f73))
* Added DrusenFinder to octbase ([`46ec78c`](https://github.com/MedVisBonn/eyepy/commit/46ec78c54778143b23003a0c583e43239f307edd))
* Work in progress on the DrusenFinder ([`bb69833`](https://github.com/MedVisBonn/eyepy/commit/bb69833bc2735c960c19a16fe966637486a8a40f))
* When loading B-Scans assume image has 2 dimensions. In case it as 3 dimensions (last dimension for RGB) keep only the R array ([`0290a7b`](https://github.com/MedVisBonn/eyepy/commit/0290a7b11d2ebcb0de11f8c46958bec923316783))
* minor fix ([`04f8d6b`](https://github.com/MedVisBonn/eyepy/commit/04f8d6b461096d70c818e17e4bdf5755d8b6f71e))
* Merge branch &39;master&39; into merge_to_public
Conflicts:
setup.py ([`b300bd6`](https://github.com/MedVisBonn/eyepy/commit/b300bd6d18bd60a01e1f4341cceae2d7e63b4be0))
* added drusen metrics and fixed drusen computation ([`1e38f65`](https://github.com/MedVisBonn/eyepy/commit/1e38f65f456b9e799003c079f314e376fb73850c))
* Drusen code is clean, tests missing ([`c28de74`](https://github.com/MedVisBonn/eyepy/commit/c28de743ca1a943cab8ff18f1af2a444b58edc47))
* Started to add drusen computation from layer segmentation. ([`5e8d511`](https://github.com/MedVisBonn/eyepy/commit/5e8d511352cebb6a2916d621b34d0a7ac7fcdd0a))
* Store only one channel of the loaded bscan ([`b7d0827`](https://github.com/MedVisBonn/eyepy/commit/b7d0827895a532380812f750cbdd6024ca1a77b8))
* Added seaborn dependcy ([`9e41356`](https://github.com/MedVisBonn/eyepy/commit/9e413569524eed787b1b87d9a14a172d13c98ccb))
* relaxed dependencies for now ([`c2a3ed8`](https://github.com/MedVisBonn/eyepy/commit/c2a3ed8b23fc8c23a6a7b159528e065340dc32f2))
* initial commit ([`c0cb0ca`](https://github.com/MedVisBonn/eyepy/commit/c0cb0cad26c2615c48acd5312fd712ac057b18c0))
* minor plotting changes ([`ceb5fed`](https://github.com/MedVisBonn/eyepy/commit/ceb5fed3380451a3d1c3970d437ddb0b2816e407))
* fixed specification for vol files ([`0afb7ee`](https://github.com/MedVisBonn/eyepy/commit/0afb7ee3136171826a4dce47ea1bda4d697f7b63))
* bug fixes and reorganization ([`2a1dde1`](https://github.com/MedVisBonn/eyepy/commit/2a1dde1ad4dd804c150559053e49c4ed719322a9))
* latest changes ([`39ccccd`](https://github.com/MedVisBonn/eyepy/commit/39ccccd45cd86076068854c5e0132afc00e5655b))
* old changes ([`2ca90dc`](https://github.com/MedVisBonn/eyepy/commit/2ca90dc852bb8d798078fa97bb86ebe603db7a1f))
* Added base classes for Oct and Bscan objects which define the interface and deliver basic plotting functionality ([`a5f82df`](https://github.com/MedVisBonn/eyepy/commit/a5f82df29db52d1335fcd2d0063cae62b38f4514))
* Fixed parsing B-Scans for the Heyex XML export ([`70b101c`](https://github.com/MedVisBonn/eyepy/commit/70b101cb06d586873c0c75f76bc04b55fabadb2e))
* read Heyex XML exports with the same class as the Heyex VOL export. This makes both exports accessible using the same interface ([`b05b3a0`](https://github.com/MedVisBonn/eyepy/commit/b05b3a0672ade242968e0670c2b2249c11f78056))
* memory mapped file for reading .vol ([`37b31d5`](https://github.com/MedVisBonn/eyepy/commit/37b31d5fbb151145a619f6ca74a1f5b21e1fd394))
* fixed comma ([`efb4dc7`](https://github.com/MedVisBonn/eyepy/commit/efb4dc7d69528796753bd19586cb0a1e7a15b586))
* Added support for reading segmentations from .vol ([`5cebe5e`](https://github.com/MedVisBonn/eyepy/commit/5cebe5ebfd5abd14004f4bd8954ed5c49ea5786e))
* Merge remote-tracking branch &39;origin/master&39;
Conflicts:
docs/conf.py
eyepy/io/__init__.py
eyepy/io/base.py
eyepy/io/he_vol.py ([`95eb730`](https://github.com/MedVisBonn/eyepy/commit/95eb73041d750d0b5ffe295b89ba5b2f67bb8076))
* HeyexOct docstring ([`f539013`](https://github.com/MedVisBonn/eyepy/commit/f539013293872040d5930b88da29339b3f58efb0))
* Added sphinx extensions for numpy style docstrings (napoleon) and typehints (sphinx_autodoc_typehints) ([`8faa2d7`](https://github.com/MedVisBonn/eyepy/commit/8faa2d7b87c081efd875f59ed50af958c0858815))
* Documentation and clean up in progress ([`8770649`](https://github.com/MedVisBonn/eyepy/commit/877064904c5ba8b8551aa7bdc5056a773fb5da2e))
* Rewrite vol import ([`d9b138e`](https://github.com/MedVisBonn/eyepy/commit/d9b138eab1630fc540b006111a6902c6fa848b5f))
* changes to the filtergrid to use it more flexible ([`5c3c0a7`](https://github.com/MedVisBonn/eyepy/commit/5c3c0a7bc9c5d2d98c7e8fa4a2a1cbefd6a2e6e7))
* Another commit ([`64e1d1b`](https://github.com/MedVisBonn/eyepy/commit/64e1d1bf1d689636950e27d0ed60f0e2ae8deda9))
* new approach ([`9d883af`](https://github.com/MedVisBonn/eyepy/commit/9d883afacb95b541c677fb9d3ec307f596043269))
* registartion progress ([`5705254`](https://github.com/MedVisBonn/eyepy/commit/5705254950fbac17c52d7e12b965edbfa3c82e33))
* log gabor completeted ([`7f42ea6`](https://github.com/MedVisBonn/eyepy/commit/7f42ea6e812cfe81c64b01ecdaac021c9d31eba7))
* ... ([`f5b451a`](https://github.com/MedVisBonn/eyepy/commit/f5b451acaf9d9960f2bcdec059e8d10aa99671fd))
* progress on registration ([`8fb4755`](https://github.com/MedVisBonn/eyepy/commit/8fb475538ab6cb290dc3b7dda0562cf77ecf6347))
* progress on log gabor ([`51e5205`](https://github.com/MedVisBonn/eyepy/commit/51e5205aa42992e752da56812f6f63436493d6b5))
* work in progress register nir/cfp ([`b09762d`](https://github.com/MedVisBonn/eyepy/commit/b09762dbc5af344e92967215989297fb06b24c02))
* Project init ([`ad34732`](https://github.com/MedVisBonn/eyepy/commit/ad3473284d8c5edf26283a16f86c966d49d51647))
* Initial commit ([`d1b9af2`](https://github.com/MedVisBonn/eyepy/commit/d1b9af22e3b60145ed43307b785832b480731dad))