Fgpyo

What's Changed

* Feature/metric with dataclass or attr by TedBrookings in https://github.com/fulcrumgenomics/fgpyo/pull/80

**Full Changelog**: https://github.com/fulcrumgenomics/fgpyo/compare/0.2.0...0.3.0

What's Changed
* **Breaking Change:** Drop support for python 3.7 by jdidion in https://github.com/fulcrumgenomics/fgpyo/pull/98
* Support python 3.11 and 3.12 in CI, update black, flake8, and poetry versions by jdidion in https://github.com/fulcrumgenomics/fgpyo/pull/99
* Factor out functions for parsers for built-in collections by jdidion in https://github.com/fulcrumgenomics/fgpyo/pull/101


**Full Changelog**: https://github.com/fulcrumgenomics/fgpyo/compare/0.1.3...0.2.0

What's Changed
* Add `fgpyo.sam.SupplementaryAlignment.from_read()` constructor, which creates `SupplementaryAlignment`s from a read's `SA` tag by msto in https://github.com/fulcrumgenomics/fgpyo/pull/85
* Fix the check for `None` type in `inspect._get_parser` by jdidion in https://github.com/fulcrumgenomics/fgpyo/pull/96

New Contributors
* jdidion made their first contribution in https://github.com/fulcrumgenomics/fgpyo/pull/96

**Full Changelog**: https://github.com/fulcrumgenomics/fgpyo/compare/0.1.2...0.1.3

What's Changed

* Add a py.typed file for package to be PEP561 compliant by clintval in https://github.com/fulcrumgenomics/fgpyo/pull/81

**Full Changelog**: https://github.com/fulcrumgenomics/fgpyo/compare/0.1.1...0.1.2

What's Changed

* Offer GZIP support for `Metric` IO by clintval in https://github.com/fulcrumgenomics/fgpyo/pull/52
* Add method `is_clipping` to `CigarOp` by kockan in https://github.com/fulcrumgenomics/fgpyo/pull/54
* Add `vcf` module by TedBrookings in https://github.com/fulcrumgenomics/fgpyo/pull/47
* Suppress stderr printing when sam indices are older than SAM file by TedBrookings in https://github.com/fulcrumgenomics/fgpyo/pull/48
* Add `Template.write_to()` by msto in https://github.com/fulcrumgenomics/fgpyo/pull/62
* Add `set_tag` method to `Template` by msto in https://github.com/fulcrumgenomics/fgpyo/pull/59
* Add header property by msto in https://github.com/fulcrumgenomics/fgpyo/pull/58
* Use rtd theme by msto in https://github.com/fulcrumgenomics/fgpyo/pull/63
* Add `chrom1`/`chrom2` arguments to `add_pair()` by msto in https://github.com/fulcrumgenomics/fgpyo/pull/61
* `fast_concat()` for `Metric` by kockan in https://github.com/fulcrumgenomics/fgpyo/pull/53
* Fix install and test by TedBrookings in https://github.com/fulcrumgenomics/fgpyo/pull/71
* Adding the option to specify the sort order of an output SAM file produced by `SamBuilder` by NatPRoach in https://github.com/fulcrumgenomics/fgpyo/pull/25
* Fix type problems found by latest mypy by TedBrookings in https://github.com/fulcrumgenomics/fgpyo/pull/75
* Have `ContigBuilder.add()` default to adding 1x the bases provided by clintval in https://github.com/fulcrumgenomics/fgpyo/pull/76
* Add VCF module to docs and fixup docs warnings by clintval in https://github.com/fulcrumgenomics/fgpyo/pull/78
* Add a context manager for zipping FASTX files by clintval in https://github.com/fulcrumgenomics/fgpyo/pull/77

New Contributors

* clintval made their first contribution in https://github.com/fulcrumgenomics/fgpyo/pull/52
* kockan made their first contribution in https://github.com/fulcrumgenomics/fgpyo/pull/54
* TedBrookings made their first contribution in https://github.com/fulcrumgenomics/fgpyo/pull/47
* msto made their first contribution in https://github.com/fulcrumgenomics/fgpyo/pull/62

**Full Changelog**: https://github.com/fulcrumgenomics/fgpyo/compare/0.1.0...0.1.1

What's Changed
* Metric.read should support skipping extra columns by nh13 in https://github.com/fulcrumgenomics/fgpyo/pull/50. This is a breaking change!


**Full Changelog**: https://github.com/fulcrumgenomics/fgpyo/compare/0.0.8...0.1.0