Figeno

- New track type: **ase** (allele-specific expression). Shows variant allele frequency for SNPs in genes, in DNA and RNA, in order to display if some genes are expressed from only one allele. See [the documentation](https://figeno.readthedocs.io/en/latest/content/describe_figure.html#ase). This requires preprocessed data generated by [fast_ase](https://github.com/e-sollier/fast_ase).
- bed track: added use_file_colors option to use colors provided in the bed file (ninth column), show_strand to show the orientation of each interval. By default, overlapping intervals will now be displayed on multiple rows, unless collapsed is set to true.
- GUI: added tooltips to explain the effect of each parameter.

* Improved support for gtf and gff3 formats for the gene track.
* Fixed bigwig track when displaying small regions.
* Added parameters for various tracks:
* chr_prefix for the chr_axis track
* min_height for the sv track
* show_strand for the bed track

- Added group autoscale for bigwig and coverage tracks.
- Added support for gff3 format for gene annotations.
- Improved the GUI for the copynumber track.
- Fixed various bugs reported by users:
- now correctly handles vcf files with indels for sv tracks.
- now correctly handles tsv input for sv tracks.
- now correctly plots copynumber tracks in circular layout, when only CNVs are provided.
- fixed a bug with the "scale per region" option of bigwig tracks.
- now correctly handles HiC data that has not been normalized, for hic tracks.

- chr_axis track: add lw_scale parameter.
- alignments track: add more parameters for displaying split reads.
- basemod_freq track: add support for all-tab bedmethyl file format.
- Windows: fix int overflow when showing all chromosomes.
- Added several warnings.

- Better error messages (e.g. if an input file is missing or has the wrong format).
- New warning messages.
- GUI: now displays a panel once the figure is successfully generated, with buttons to open the generated figure or its directory.
- Add ticks_angle option for chr_axis track and show_gene_names option for genes track.
- Various bug fixes.

General
- Added built-in support for mm10 in addition to hg19 and hg38 (but any other reference genome can be used, if you manually provide the files).
-Removed requirement for the chr_arms file for custom reference genomes.

Regions
- Now allows region start and end to be given as strings, and also accepts commas.

Tracks
basemod_freq
- Added support for bedgraph and 3-column tsv file formats, in addition to bam and bedmethyls.
- Added parameters: style, smooth, gap_frac.

bigwig and coverage tracks
- Added "upside_down" parameter.

genes
- Improved spacing between genes.

Misc
- Various bug fixes