Fmdtools

Latest version: v2.0.5

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Page 2 of 4

2.0rc6

Version 2.0-rc-6 brings a number of changes to fmdtools graph functionality to better enable graphical specification and representation of models.

Some major updates include:
- Created ability to create hierarchical modelgraphs recursively and get properties like (1) generating code (2) methods (3) containers and parse flows, aggregations, and containments from architectures.
- Nodes in graphs now given names corresponding to their model id (e.g., pump.fxns.import_ee), rather than using a "flat" representation (import_ee)
- create_graph and as_modelgraph interfaces now can be used at the Object level to create networkx graphs as well as output ModelGraphs
- Reorganization of graph the `architecture` and `flow` modules into their corresponding modules in define.
- Some licensure/versioning fixes

**Release Checklist**

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Step | Description | Complete? | Comment
-- | -- | -- | --
1 | Sync appropriate branches into release branch | x |
1a | "Internal branches (e.g. main dev)" | x |
1b | "External branches (e.g. main)" | x |
2 | Run script run_all_tests.py and verify test results are appropriate
2a | "Run full tests" | x | Tests pass with two warnings, added to jira
2b | "Regenerate badge" | x | x
3 | Update version numbers in appropriate files | x |
3a | "Check files conf.py LICENSE.py README.py Intro_to_fmdtools.md pyproject.toml" | x |
3b | "Run a repository-wide search for the version number" | x |
4 | Generate the documentation using "./make html" | x |
5 | Commit and tag branch with the appropriate version. | x |
5a | "git tag -a v2.x.x -m 'version 2.x.x'" | x |
6 | Sync to remotes | x |
6a | "Push release branch to github and internal remotes" | x |
6b | "Push docs using `git subtree push --prefix=_build/html public gh-pages`" | x |
7 | Create a release in GitHub | x |
7a | "incorporate a narrative summary of features and changes" | x |
7b | "incorporate the auto-generated bitbucket release notes." | x |
8 | "Update project plan" | x |
8a | "Include any changed dependencies" | x |
8b | "Include version in schedule" | x |
8c | "Identify and include additional changes/activities" | x |
9 | Update/check external CI resources as needed | x |
9a | "CodeFactor" | x | Same as before
10 | If release is 'stable' Upload to PyPI (see below | N/A |

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2.0rc5

Summary
----------
This pre-release adds the following:
- Add more features to Coords to support modelling, visualization, and animating environments
- Supporting preliminary alignment between graph plots and our FRDL specification. This effort also refactored the graph module into a subpackage to support testing and future extensions, which means that any software using these graphs will need to adjust `import`s
- Add/fix some bugs identified during new modelling efforts, like making it so non-default states sent to a model continue to be used in the model and deprecating methods in Function other than static_behavior and dynamic_behavior
- Improving testing coverage
- Docs no longer tracked (which was the case prior to `2.0-rc4`
- Aside from this, the `fmdtools` development environment has shifted to using `Python 3.11`. While older versions of python *may* still be compatible, it is recommended to update to install fmdtools in a `Python 3.11` environment to remain up-to-date with our developments.

Detailed Release Notes
-------------------------
Release Notes - Resilience Analysis and Design - Version fmdtools 2.0-rc-5

<h2> Story
</h2>
<ul>
<li>[<a href='https://babelfish.arc.nasa.gov/jira/browse/RAD-374'>RAD-374</a>] - Create the ability to overlay multiple plots in the result.plot_metric_dist ()
</li>
<li>[<a href='https://babelfish.arc.nasa.gov/jira/browse/RAD-378'>RAD-378</a>] - Close missing testing pieces
</li>
<li>[<a href='https://babelfish.arc.nasa.gov/jira/browse/RAD-403'>RAD-403</a>] - Troupe fmdtools feature development opportunities
</li>
<li>[<a href='https://babelfish.arc.nasa.gov/jira/browse/RAD-406'>RAD-406</a>] - Align Graph representation with FRDL
</li>
<li>[<a href='https://babelfish.arc.nasa.gov/jira/browse/RAD-410'>RAD-410</a>] - Remove behavior() and condfaults() from function definition
</li>
</ul>

Release Checklist
-------------------
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Step | Description | Complete? | Comment
-- | -- | -- | --
1 | Sync appropriate branches into release branch | x |
1a | "Internal branches (e.g. main dev)" | x |
1b | "External branches (e.g. main)" | x |
2 | Run script run_all_tests.py and verify test results are appropriate | x |
2a | "Run full tests" | x |
2b | "Regenerate badge" | x |
3 | Update version numbers in appropriate files | x |
3a | "Check files conf.py LICENSE.py README.py Intro_to_fmdtools.md pyproject.toml" | x |
3b | "Run a repository-wide search for the version number" | x |
4 | Generate the documentation using "./make html" | x |
5 | Commit and tag branch with the appropriate version. | x |
5a | "git tag -a v2.x.x -m 'version 2.x.x'" | x |
6 | Sync to remotes | x |
6a | "Push release branch to github and internal remotes" | x |
6b | "Push docs using `git subtree push --prefix=_build/html public gh-pages`" | x |
7 | Create a release in GitHub | x |
7a | "incorporate a narrative summary of features and changes" | x |
7b | "incorporate the auto-generated bitbucket release notes." | x |
8 | "Update project plan" | x |
8a | "Include any changed dependencies" | x |
8b | "Include version in schedule" | x |
8c | "Identify and include additional changes/activities" | x |
9 | Update/check external CI resources as needed | x |
9a | "CodeFactor" | x | from 110 to 99 issues
10 | If release is 'stable' Upload to PyPI (see below | N/A | N/A

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2.0rc4

v2.0-rc-4 is mainly an update to documentation in preparation to the official v2.0 release.

Highlights include:
- Updated logo
- Improved organization of docs
- More resources for docs (figures/diagrams, etc)
- Removed minor bug in Result.get_values

Notes:

Release Notes - Resilience Analysis and Design - Version fmdtools 2.0-rc-4

<h2> Story
</h2>
<ul>
<li>[<a href='https://babelfish.arc.nasa.gov/jira/browse/RAD-241'>RAD-241</a>] - Release documentation update
</li>
</ul>

**Full Changelog**: https://github.com/nasa/fmdtools/compare/v2.0-rc-3...v2.0-rc-4

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Step | Description | Complete? | Comment
-- | -- | -- | --
1 | Sync appropriate branches into release branch | x |
1a | "Internal branches (e.g. main dev)" | x |
1b | "External branches (e.g. main)" | x |
2 | Run script run_all_tests.py and verify test results are appropriate | x |
2a | "Run full tests" | x |
2b | "Regenerate badge" | x |
3 | Update version numbers in appropriate files | x | updated to 2.0-rc-4
3a | "Check files conf.py LICENSE.py README.py Intro_to_fmdtools.md pyproject.toml" | x |
3b | "Run a repository-wide search for the version number" | x |
4 | Generate the documentation using "./make html" | x |
5 | Commit and tag branch with the appropriate version. | x |
5a | "git tag -a v2.x.x -m 'version 2.x.x'" | x |
6 | Sync to remotes | x |
6a | "Push release branch to github and internal remotes" | x |
6b | "Push docs using `git subtree push --prefix=_build/html public gh-pages`" | x |
7 | Create a release in GitHub | x |
7a | "incorporate a narrative summary of features and changes" | x |
7b | "incorporate the auto-generated bitbucket release notes." | x |
8 | "Update project plan" | x |
8a | "Include any changed dependencies" | x |
8b | "Include version in schedule" | x |
8c | "Identify and include additional changes/activities" | x |
9 | Update/check external CI resources as needed | x |
9a | "CodeFactor" | x |
10 | If release is 'stable' Upload to PyPI (see below | x |

</body>

</html>

2.0rc3

These updates cover basic adaptation of the rover model(s) and use cases, not counting the adaptation will need to be done for various papers.
- Notably, it re-adds the ability to sample from histories using the ParameterHistSample class.
- It also adapts a few of the notebooks for the RoverModel using this new class.
- It also cleans up a few bugs which have been identified so far.
- This version also comes with significant updates to documentation, to reflect upcoming release.

**Full Changelog**: https://github.com/nasa/fmdtools/compare/v2.0-rc-2...v2.0-rc-3

<h2> Links to Bugs/Stories
</h2>
<ul>
<li>[<a href='https://babelfish.arc.nasa.gov/jira/browse/RAD-389'>RAD-389</a>] - Final Version 2 Rover Adaptation and Bugfixes
</li>
</ul>

**Checklist**
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Step | Description | Complete? | Comment
-- | -- | -- | --
1 | Sync appropriate branches into release branch | x |
1a | "Internal branches (e.g. main dev)" | x |
1b | "External branches (e.g. main)" | x |
2 | Run script run_all_tests.py and verify test results are appropriate | x |
2a | "Run full tests" | x | All pass except skiped. Added RAD-401 for numpy warning
2b | "Regenerate badge" | x |
3 | Update version numbers in appropriate files | x | 2.0-rc-3
3a | "Check files conf.py LICENSE.py README.py Intro_to_fmdtools.md" | x |
3b | "Run a repository-wide search for the version number" | x | added pyproject.toml to list for next time
4 | Generate the documentation using "./make html" | x |
5 | Commit and tag branch with the appropriate version. | x |
5a | "git tag -a v2.x.x -m 'version 2.x.x'" | x |
6 | Sync to remotes | x |
6a | "Push release branch to github and internal remotes" | x |
6b | "Overwrite documentation on gh-pages and push to GitHub" | x |
7 | Create a release in GitHub | x |
7a | "incorporate a narrative summary of features and changes" | x |
7b | "incorporate the auto-generated bitbucket release notes." | x | Using github notes instead
8 | "Update project plan" | x |
8a | "Include any changed dependencies" | x |
8b | "Include version in schedule" | x |
8c | "Identify and include additional changes/activities" | x |
9 | Update/check external CI resources as needed | x | Some issues added but still rated A
9a | "CodeFactor" | x |
10 | If release is 'stable' Upload to PyPI (see below | N/A |

</body>

</html>

2.0rc2

The 2.0-rc-2 release adds more polish to the fmdtools codebase prior to release. This progress point represents a final refinement on the codebase and features prior to our official release.

The main changes are:
- All blocks now require a defined __slots__ for new objects, encouraging speed and type-safety
- Results now save using numpy.save, removing an instance where the pickle module was (unsafely) being used to save and load results
- Bringing several research examples in the rover up to speed with the current developments in fmdtools
- Incorporation of a new taxiway model to demonstrate modelling of Systems of Systems
- A polishing of the documentation repository.

Release Notes - Resilience Analysis and Design - Version fmdtools 2.0-rc-2

<h2> Story
</h2>
<ul>
<li>[<a href='https://babelfish.arc.nasa.gov/jira/browse/RAD-224'>RAD-224</a>] - Adapt AST Sampling notebook/methodology
</li>
<li>[<a href='https://babelfish.arc.nasa.gov/jira/browse/RAD-242'>RAD-242</a>] - Incorporate Taxiway model in examples
</li>
<li>[<a href='https://babelfish.arc.nasa.gov/jira/browse/RAD-249'>RAD-249</a>] - Avoid and deprecate pickle for save/load
</li>
<li>[<a href='https://babelfish.arc.nasa.gov/jira/browse/RAD-317'>RAD-317</a>] - Fix bug in multiplots - ticks should rotate even if no plot
</li>
<li>[<a href='https://babelfish.arc.nasa.gov/jira/browse/RAD-337'>RAD-337</a>] - Enable better attribute safety in Flows, Blocks, etc
</li>
</ul>

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Release Checklist

<body link="0563C1" vlink="954F72">

Step | Description | Complete? | Comment
-- | -- | -- | --
1 | Sync appropriate branches into release branch | x |
1a | "Internal branches (e.g. main dev)" | x |
1b | "External branches (e.g. main)" | x |
2 | Run script run_all_tests.py and verify test results are appropriate | x |
2a | "Run full tests" | x | Errors added as bug:s =========================== short test summary info =========================== ERROR examples/rover/rover_mode_space.py - TypeError: 'NoneType' object is not callable ERROR examples/rover/optimization/ea_analysis.py - FileNotFoundError: [Errno 2] No such file or directory: 'results/rslt_ea.csv'
2b | "Regenerate badge" | x |
3 | Update version numbers in appropriate files | x |
3a | "Check files conf.py LICENSE.py README.py Intro_to_fmdtools.md" | x |
3b | "Run a repository-wide search for the version number" | x |
4 | Generate the documentation using "./make html" | x |
5 | Commit and tag branch with the appropriate version. | x |
5a | "git tag -a v2.x.x -m 'version 2.x.x'" | x |
6 | Sync to remotes | x |
6a | "Push release branch to github and internal remotes" | x |
6b | "Overwrite documentation on gh-pages and push to GitHub" | x |
7 | Create a release in GitHub | x |
7a | "incorporate a narrative summary of features and changes" | x |
7b | "incorporate the auto-generated bitbucket release notes." | x |
8 | "Update project plan" | x |
8a | "Include any changed dependencies" | x |
8b | "Include version in schedule" | x |
8c | "Identify and include additional changes/activities" | x |
9 | Update/check external CI resources as needed | x |
9a | "CodeFactor" | x | Grade went from A- to A!
10 | If release is 'stable' Upload to PyPI (see below | N/A |

</body>

</html>

2.0rc1

- Re-organization of define package into object, container, block, and architecture subpackages representing each type of simulation.
- Definition of new BaseObject, Container, and Architecture classes which are now used to define how simulation structures initialize attributes, create histories, return mutables, etc
- FxnBlock is now named Function in keeping with class name convention
- Model, ASG, Comparch repaced by FunctionArchitecture, ActionArchitecture, and ComponentArchitecture classes which all inherit from/specialize the base Architecture class
- Simulation histories now fully created at instantiation via the tracking argument rather than in propagate.
- Roles (i.e., init_c, init_p, init_flowname) now given explicit names corresponding to their type (i.e., container_c, container_p, flow_flowname)
- Basic adaptation of tests, examples, and documentation.
- Usage of "coverage" package in testing to give overall testing coverage report.

Auto-generated release notes

Release Notes - Resilience Analysis and Design - Version fmdtools 2.0-rc-1

<h2> Sub-task
</h2>
<ul>
<li>[<a href='https://babelfish.arc.nasa.gov/jira/browse/RAD-334'>RAD-334</a>] - Create sub-package for roles
</li>
<li>[<a href='https://babelfish.arc.nasa.gov/jira/browse/RAD-335'>RAD-335</a>] - Decompose/Refactor Architectures
</li>
</ul>

<h2> Story
</h2>
<ul>
<li>[<a href='https://babelfish.arc.nasa.gov/jira/browse/RAD-233'>RAD-233</a>] - Refactor and Generalize Architectures (ASG, CompArch, Model)
</li>
<li>[<a href='https://babelfish.arc.nasa.gov/jira/browse/RAD-319'>RAD-319</a>] - Add testing coverage to code testing reporting
</li>
</ul>

Release checklist
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Step | Description | Complete? | Comment
-- | -- | -- | --
1 | Sync appropriate branches into release branch | X |
1a | Internal branches (e.g. main dev) | X |
1b | External branches (e.g. main) | x |
2 | Run script run_all_tests.py and verify test results are appropriate | X |
2a | Run full tests | x | 11 failures, mainly in model reset (no longer used but kept for future) and rover model. Some errors also in rover model, AST sampling due to lack of packages. 76% coverage on inaugural run, weak spots identified in rover, pump examples.
2b | Regenerate badge | x |
3 | Update version numbers in appropriate files | x | Fmdtools 2.0-rc-1
3a | Check files conf.py LICENSE.py README.py Intro_to_fmdtools.md | x |
3b | Run a repository-wide search for the version number | x |
4 | Generate the documentation using “./make html” | x | Need to figure out what is going on with badge – adds extra tests to numerator and denominator. (the errors?)
5 | Commit and tag branch with the appropriate version. | x |
5a | git tag -a v2.x.x -m ‘version 2.x.x’ | x |
6 | Sync to remotes | x |
6a | Push release branch to github and internal remotes | x |
6b | Overwrite documentation on gh-pages and push to GitHub | x |
7 | Create a release in GitHub | X |
7a | incorporate a narrative summary of features and changes | X |
7b | incorporate the auto-generated bitbucket release notes. | x |
9 | Update/check external CI resources as needed | x |
9a | CodeFactor | x | 66 fixed issues, 27 new issues in the past month (173 total). Grade remains A-.
10 | If release is ‘stable’ Upload to PyPI (see below | | NA


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