Gene-connector-cli

Feat

- include a feature that allow user to print examples from gene headers

Fix

- move left return on find duplicate accession numbers to the last step of the genes validations to allow the pipeline to validate all records before stop pipeline

Refactor

- replace native domain utils to use clean-base dependencies instead

Fix

- fix source-data validation to check all records before return an duplication error

Refactor

- place use-cases to dedicated sub-module folders to turn better the module organization

Feat

- update the caching strategy and create a final method to generate a compiled table of all populated data
- upgrade pickledb storage
- upgrade the main pipeline execution logs to be more informative and human friendly

Fix

- upgrade project to include the input data partially at the output data
- move the current user email checking to the use case that perform the genbank data fetching instead of the settings file

Feat

- implements a caching strategy based on pickle-db
- implements the aceptance of accession lists in gene source codes
- implements the all in one pipeline runner to execute the full cli steps

Fix

- remove unused print after execute the main cli case
- update the genes validation of the reference-data model
- fix the wrong calculation of the completeness indices in build-metadata-match-scores use-case