Genet

Bug fixed

1. DeepSpCas9 score function fixed
2. Input check filter added
3. If there are no available pegRNAs, raise massage and return nothing

Thanks to Hyeongcheol Oh,
who raise this issues

Update DeepPrime-FT for other cell lines!

fix bugs

biopython - gc_fraction function changed

What's New

**1. Silence tensorflow warnings**

**2. bug fixed (pecv_score)**

What's New

**1. genet.database include ClinVar fetching**
python
from genet import database as db

Accession (VCV) or variantion ID is available
cv_record = db.GetClinVar('VCV000428864.3')

print(cv_record.seq()) default context length = 60nt



**2. ClinVar record is available for DeepPrime**

python
from genet import database as db
from genet import predict as pred

cv_record = db.GetClinVar('VCV000428864.3')
pred.pecv_score(cv_record)

What's New

**1. ViennaRNA package is removed from auto installation list**
ViennaRNA package was not installed well with pip.
GenET is not installed with ViennaRNA anymore, and you need to use conda install.

**2. genet.database module is now available!!**
You can use it like this:

python
from genet import database as db

brca1 = db.GetGene('BRCA1')
list_exons = brca1.exons()