Genomedata

Latest version: v1.7.3

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1.4.4

* fixed pkg-config output encoding when finding HDF5 directories

1.4.3

* fixed genomedata script entry points for Python 3

1.4.2

* added compatibilty for Python 3
* genomedata-load-seq: adjacent AGP entries are merged into a single supercontig
* Use pkg-config during setup to determine paths to HDF5 directories
* Removed forked-path dependency, added Path.py

1.4.1

* genomedata-hard-mask: fix verbosity line not outputting to stderr
* genomedata-load-data: fix hdf5 group leak

1.4.0

* genomedata-close-data: chunk metadata now truncates telomeres and trims large
gaps between supercontigs
* genomedata-load-data: new option for masking data with --maskfile
* genomedata-hardmask: new command added to filter out track regions
* hardmask_data: new python interface to filter out track regions
* Genome: add ability to open archives for writing
* genomedata-load-seq: AGP are now correctly loaded regardless of filename and
may be concatenated together
* genomedata-load-seq: fix assertion failure on argument parsing when loading
fasta sequence (thanks to Kate Cook)
* genomedata-load: fix agp files not being recognized from this entry point
* docs: clarified that agp files cannot be combined
* docs: warned users that globs must be quoted to be parsed by genomedata-load

1.3.6

* genomedata-load-data now support bigWig files if the bigWigToBedGraph
utility is installed
* `sizes` command added to `genomedata-info` (Jay Hesselberth)
* Updated installation instructions for installing with PyTables 3.1.1
* toward python3 compatibility (Jay Hesselberth)
- genomedata now requires python 2.7+
- moved from `optparse` to `argparse` throughout
- package-wide `__version__` lets modules report true version number
- __future__ imports added to all modules and python3 `print()`
functions

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