Genvarloader

Feat

- option to return ragged data from gvl.Dataset. output_length is set dynamically. fix: hap reconstruction matches bcftools. change default for Dataset.deterministic from False to True. change track output from a list of arrays to having a track dimension i.e. from shape (b [p] l) to (b t [p] l). docs: add dataset.md, faq.md and overhaul geuvadis.ipynb to be simpler and reflect changes in API.

Fix

- incorrect mask from get_keep_mask_for_length (37)

Feat

- sequence annotations

Feat

- allow subset_to() to accept boolean masks and polars Series
- allow subset_to() to accept boolean masks and polars Series

Fix

- add test for subset_to
- add test for subset_to
- update tests to match internal API changes
- update tests to match internal API changes
- bug in mark_keep_variants with spanning deletions.

Fix

- change loop order to only open files once.
- respect memory limits when writing bigwig data.
- online docs notebook syntax highlightning
- better docs.

Fix

- bump version
- scalar dataset indexing, region_indices order, updated docs, hotfixes