This version of the software is for testing and early adopters.
Usage documentation, including walk-through tutorials are available on the docs pages: [https://grapevne.readthedocs.io/en/latest/](https://grapevne.readthedocs.io/en/latest/).
Please report problems encountered on the [issues page](https://github.com/kraemer-lab/GRAPEVNE/issues).
Discussion points, such as suggestions for new features, should be raised on the [discussions page](https://github.com/kraemer-lab/GRAPEVNE/discussions).
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Updates for this build include
- [X] Bundle conda (mambaforge) with Windows installation
- [X] Snakemake cannot execute Conda when running standalone. Workflows run fine when GRAPEVNE is launched from the terminal.
- [X] This appears to be a PATH issue. Bundling mambaforge with GRAPEVNE resolves the issue. An option has been added to select between the bundled conda, and the system conda (although PATH is not necessarily inherited). Environment variables can instead be passed for runtime execition through GRAPEVNE, which are expecially useful for 1) launching conda in x64 mode, and 2) providing the conda binary path, e.g. "CONDA_SUBDIR=osx-64;PATH=/Path-to-local-conda"
- [X] Bundle conda with GRAPEVNE
- [X] Modify build instructions for bundling across different OSs
- [X] Node validation is failing. Problem was due to improper named argument passing of the snakemake launcher in the GRAPEVNE-builder system.
- [X] Don't create zip file during build & run, only during Build (optimisation; creating the zip file is slow)
- [X] Revert module listing code from python to nodejs (faster / more efficient)