Graphkb

Bugfix:

- Update GH workflow for PyPi publishing on released

New feature:
- New utility functions to accomodate for positional variant comparison

Bugfix:
- fix match.py::match_positional_variant() not to use matched generic variants in 'similarTo' queries
- require install of requests<2.29.0 to avoid any errors with urllib

v.1.9.1
Improvements

- Add support for GeneralizationOf edges in matching positional variants

Bugfix

- Fix mkdocs redirect mapping for matching directory

New Features:
* get_statements_from_variants - helper function added.
* get_term_list - helper function added.
* get_rid - helper function added.
* get_pharmacogenomic_info - helper function added.
* get_cancer_predisposition_info - helper function added.
* Added constants PHARMACOGENOMIC_RELEVANCE_TERMS and PHARMACOGENOMIC_SOURCE_EXCLUDE_LIST
Bugfix:
* Ignore gene name version in get_equivalent_features. Eg. NM_033360.4 should match 'NM_033360' and 'KRAS'.
Improvements:
* get_preferred_gene_name - moved to genes.py
* move CHOMOSOMES and PREFERRED_GENE_SOURCE to constants.py
* add retries on connection failure
added tests:
* test_get_pharmacogenomic_info
* test_get_cancer_predisposition_info
* reduced runtime of longest test
* add match test

New Contributors
* mattdoug604 made their first contribution in https://github.com/bcgsc/pori_graphkb_python/pull/66

**Full Changelog**: https://github.com/bcgsc/pori_graphkb_python/compare/v1.7.0...v1.8.0

New Features:
- new RELEVANCE_BASE_TERMS 'pharmacogenomic': ['metabolism', 'toxicity', 'dosage'] and 'cancer predisposition': ['pathogenic'] (GERO-272)
- setup update - use pyproject.toml and setup.cfg (DEVSU-1697)

New Features
- 39: Support arbitrary base queries

Improvements
- Use parameterize to clean up tests
- Add build support for python versions: 3.9, 3.10

BugFixes
- GERO-217: Ignore null positions