Hamronization

Fix for unresolved empty summary bug (80)

- Adds support for fARGene retrieve gene file
- Resolves issue with RGI parsing when RGI is run on ORFs
- Addressing running hamronize or summarize on empty output files
- Add additional integration tests
- Add testing for interface outputs (empty parsed reports, empty summarised reports, mixed tsv + json in input)
- Add additional validation tests
- Closes all current external requests/established issues.
- Supersedes and closes 79 and should address 78

What's Changed
* Update installation via conda in README.md by thanhleviet in https://github.com/pha4ge/hAMRonization/pull/51
* Update README.md by thanhleviet in https://github.com/pha4ge/hAMRonization/pull/55
* TB-Profiler IO by jodyphelan in https://github.com/pha4ge/hAMRonization/pull/62
* specify protein or nt variant by jodyphelan in https://github.com/pha4ge/hAMRonization/pull/63
* add tb tests by jodyphelan in https://github.com/pha4ge/hAMRonization/pull/64
* Changes to TBProfilerIO by jodyphelan in https://github.com/pha4ge/hAMRonization/pull/68
* Add draft parser for mykrobe by pvanheus in https://github.com/pha4ge/hAMRonization/pull/69
* Update parsers with new schema version by cimendes in https://github.com/pha4ge/hAMRonization/pull/76
* Update parsers by fmaguire in https://github.com/pha4ge/hAMRonization/pull/77
* Update AMR Gene Detection Scheme by cimendes in https://github.com/pha4ge/hAMRonization/pull/60

New Contributors
* thanhleviet made their first contribution in https://github.com/pha4ge/hAMRonization/pull/51
* jodyphelan made their first contribution in https://github.com/pha4ge/hAMRonization/pull/62
* pvanheus made their first contribution in https://github.com/pha4ge/hAMRonization/pull/69

**Full Changelog**: https://github.com/pha4ge/hAMRonization/compare/v1.0.3...v1.0.4

Incoporate bug fixes from aunderwo and add packaging for pypi

- Release adds support for resfinder v4 courtest of aunderwo
- Fixes a bug in resfinder v3 strand orientation parsing

Officially 1.0.0 release

- Implements latest version of the AMR detection specification scheme
- Includes automated sanity and functional tests
- Performs various options of summarizing results.