- Use local alignment for the iterative mapping mode with bowtie2 - Update deprecated sklearn pypi package requirement - Update the docs
3.1.5
- Fix file extension in hicstuff rebin. - Fix incompatibility between lines and trim in hicstuff view. - More flexible binning suffix support. - Update commands.py and fix pandas >= 1.5, accordingly.
3.1.4
- Correct build to make it work. - Correct hicstuff rebin fragments size issue.
3.1.3
- Check third parties at the beginning of pipeline. - Change output file names of hicstuff cutsite. - Reverse reads if necessary in the hicstuff cutsite. - Improve figures plot.
3.1.2
- Add support for compressed genome - Repare camembert plot - Fix deprecation error form matplotlib 3.5.0 - correctly report when matrix rows do not match header in hics_flexible_loader - Pin matplotlib version and docutils
3.0.1
* Improve dockerfile base layer to address compatibility bug with libcrypto. * Standardize the format of default values in CLI help messages. * Fix bug in distancelaw causing integer conversion of custom log bases