Histomicstk

What's Changed
* Tutorial on creating random forest classifier by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1052
* Don't serialize some options to json by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1097


**Full Changelog**: https://github.com/DigitalSlideArchive/HistomicsTK/compare/v1.3.1...v1.3.2

What's Changed
* Fix a format string. by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1078
* Guard empty list by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1079
* Nuclei classification can run without feature / annotation files by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1051
* Compact Nuclei Notation by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1083
* Improve linting and consistency by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1084


**Full Changelog**: https://github.com/DigitalSlideArchive/HistomicsTK/compare/v1.3.0...v1.3.1

What's Changed
* Only release with github actions. by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1068
* Tutorial nuclei classification by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1050
* Use the common exta_requires on non-linux platforms by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1072
* synced nuclei features and nuclei detection. by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1070
* Test more of the CLI code. by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1073
* Update some tests to handle minor version changes by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1074
* Update tests for Python 3.12 by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1075
* Bump actions/checkout from 3 to 4 by dependabot in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1077
* Bump python from 3.11-slim to 3.12-slim by dependabot in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1076

New Contributors
* dependabot made their first contribution in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1077

**Full Changelog**: https://github.com/DigitalSlideArchive/HistomicsTK/compare/v1.2.10...v1.3.0

What's Changed
* Use github actions to build wheels. by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1060
* supress rank warning by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1059
* Don't use a futures pool to compute polygons. by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1062


**Full Changelog**: https://github.com/DigitalSlideArchive/HistomicsTK/compare/v1.2.9...v1.2.10

What's Changed
* Improve repeatability of tox docs process. by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1010
* Expose the version number as histomicstk.__version__ by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1013
* added tile overlap parameter by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1009
* Adjust for Cython 3 by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1022
* NucleiClassification - added attributes to the annotation file. by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1014
* Fix guarding against zero values in rgb_to_sda by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1024
* Use an official mongo test image by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1025
* Drop Python 3.6 by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1026
* Use a single test girder server for all tests by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1027
* Drop Python 3.6 from wheels by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1028
* SuperpixelSegmentation-annotation-attributs-added-to-metadata by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1016
* Instead of output a return parameters file, output an annotation. by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1023
* Fix running compute nuclei features on an ROI by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1029
* ComputeNucleiFeatures-outputfile-metadata by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1020
* ColorDeconvolution-annotation attributes added to metadata by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1015
* SeperateStainsMacenkoPCA-added-metadatafile by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1019
* Remove overlapping nuclei segmentation by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1011
* BackgroundIntensity-added-annotation-metadata by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1021
* Harden compute nuclei features by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1034
* updated .py and .xml file to output single annotation file. by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1035
* Profile Positive pixel count by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1037
* Add an icon to the docs. by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1044
* Resolve issues with sink.crop by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1036
* Update defaults color deconvolution by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1033
* remove overlapping nuclei is a default process. by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1042
* updated depreciated functions in NuclieClassification by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1047
* Update the version of python used in the docker image. by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1048
* Update README by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1049
* Abstract nuclei detection by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1045
* find_stain_index comparison bug by cooperlab in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1058


**Full Changelog**: https://github.com/DigitalSlideArchive/HistomicsTK/compare/v1.2.8...v1.2.9

What's Changed
* Update tests for minor variations in image decoding by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/990
* Cleanup typos and minor code eccentricities by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/991
* Handle a cython numpy deprecation of long_t by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/995
* Update color_deconvolution.py by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/997
* Don't specify a basepython in tox.ini by manthey in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1001
* Support frame/style parameter in Nuclei Detection by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/996
* Record parameters and primary results in annotation metadata by subinkitware in https://github.com/DigitalSlideArchive/HistomicsTK/pull/999
* Macenko pca out of bounds fix by m101010 in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1007

New Contributors
* subinkitware made their first contribution in https://github.com/DigitalSlideArchive/HistomicsTK/pull/996
* m101010 made their first contribution in https://github.com/DigitalSlideArchive/HistomicsTK/pull/1007

**Full Changelog**: https://github.com/DigitalSlideArchive/HistomicsTK/compare/v1.2.7...v1.2.8