Housekeeper

Changed
- Replace ruamel.yaml with pyyaml for consistency in prod environment
- Deleted unused Pipfile and Pipfile.lock since they trigger dependabots

Added
- Adds option `--compact` or `-c` to concatenate filenames with subsequent integer name suffixes
Changed
Fixed

Added

- Adds Dockerfile
- Add workflow for automatic publish to docker-hub
- Add __main__ script to run housekeeper without installing

Changed
- Removed weird clean flowcell scripts from scripts/ folder

Changed
- Reworks the CLI for complete API functionality

Added
- Automatic publish to pypi