Hu-neuro-pipeline

Latest version: v0.9.0

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0.8.2

<!-- Release notes generated using configuration in .github/release.yml at main -->

What's Changed
🎉 Exciting new features
* Allow list-like types (not just list) for some input arguments by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/157
* Support `pathlib.Path` objects as input and output directories by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/158


**Full Changelog**: https://github.com/alexenge/hu-neuro-pipeline/compare/v0.8.1...v0.8.2

0.8.1

<!-- Release notes generated using configuration in .github/release.yml at main -->

What's Changed
🐛 Bug fixes
* Fix import error with new MNE version 1.6.0 by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/154


**Full Changelog**: https://github.com/alexenge/hu-neuro-pipeline/compare/v0.8.0...v0.8.1

0.8.0

<!-- Release notes generated using configuration in .github/release.yml at main -->

What's Changed
🛠 Breaking changes
* Support different raw EEG input file types beyond BrainVision (Note: Input argument `vhdr_files` is now called `raw_files`!) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/125
* Change default for `ica_n_components` from `0.99` (i.e., 99% explained variance) to `None` (all components, usually number of channels minus one) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/136
🎉 Exciting new features
* Add functions to download sample data from the ERP CORE dataset by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/122
* Support processing of non-BrainVision / non-Abdel Rahman Lab data (e.g., ERP CORE data) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/127
* Keep audio and pulse channels that are not in the montage as "misc" type by kirstenstark in https://github.com/alexenge/hu-neuro-pipeline/pull/143
* Add input argument `ref_channels` for custom re-referencing (`'average'` remains the default) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/146
* Improve dataset fetchers (offline mode, `path` argument, custom list of participants) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/149
🐛 Bug fixes
* Rename functions for getting sample datasets (now `datasets.get_ucap()` and `datasets.get_erpcore()`) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/129
* Make sure that automatic matching via `triggers_column` works for non-BrainVision data by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/138
* Fix bad epoch rejection for epochs that already have bad epoch markers (e.g., `NO_DATA`) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/140
* Fix missing manifest files that broke the dataset fetchers by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/151
📄 Documentation
* Add ERP CORE example (processing N400 data in Python) to docs by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/130
* Switch to MyST-NB (instead of nbsphinx) for rendering doc examples by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/132
* Move documentation source files into new `doc/source/` sub-directory by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/134
* Fix some issues in the docs (wrong input arguments, remove tables of content) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/152


**Full Changelog**: https://github.com/alexenge/hu-neuro-pipeline/compare/v0.7.0...v0.8.0

0.7.0

<!-- Release notes generated using configuration in .github/release.yml at main -->

What's Changed
📄 Documentation
* Create new documentation with Sphinx, hosted on ReadTheDocs (https://hu-neuro-pipeline.readthedocs.io) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/119


**Full Changelog**: https://github.com/alexenge/hu-neuro-pipeline/compare/v0.6.6...v0.7.0

0.6.6

<!-- Release notes generated using configuration in .github/release.yml at main -->

What's Changed
🐛 Bug fixes
* Fix group level error by kirstenstark in https://github.com/alexenge/hu-neuro-pipeline/pull/116

New Contributors
* kirstenstark made their first contribution in https://github.com/alexenge/hu-neuro-pipeline/pull/116

**Full Changelog**: https://github.com/alexenge/hu-neuro-pipeline/compare/v0.6.5...v0.6.6

0.6.5

<!-- Release notes generated using configuration in .github/release.yml at main -->

What's Changed
🛠 Breaking changes
* When writing epochs, the epoch trigger column is now called `"event_id"` instead of `"condition"` by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/104
* Create evokeds with `average_by` based on arbitrary log file query strings (instead of log file column names) by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/111
🎉 Exciting new features
* Add instructions for how to install development version from GitHub in README by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/106
🐛 Bug fixes
* Write `none` for `NaN` (= invalid JSON) to config file when passing data frames as `log_files` by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/102
📄 Documentation
* Fix description of temporary *high-pass* filter prior to ICA by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/109
* Update lab name and website in README and elsewhere by alexenge in https://github.com/alexenge/hu-neuro-pipeline/pull/113


**Full Changelog**: https://github.com/alexenge/hu-neuro-pipeline/compare/v0.6.4...v0.6.5

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