Insilicoseq

Latest version: v2.0.1

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2.0.1

What's Changed
* Fixed the instructions to run with docker
* fix crash when using --coverage (253)

2.0.0

New features and improvements

- amplicon simulation with `--sequence_type amplicon` (and optionally `--readcount`)
- new and updated error models (including NextSeq, and MiSeq models with different quality thresholds)
- improved memory usage and performance


Bug fixes

- `iss` now always simulates the correct number of reads
- fix incorrect insert size distributions in existing models

Other

- switch to pytest
- linting and formatting

1.6.0

- Now works with latest numpy and Biopython
- move tests to pytest
- fix 220

1.5.4

- Changes requirements to biopython <= 1.78

1.5.3

Bugfix release.

- Fix for 202

1.5.2

Bugfix release:

- Documentation clarification for `--coverage_file` (191 )
- `iss generate` should now produce the correct amount of reads even for highly fragmented genomes (195)

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