Iohub

Latest version: v0.1.0

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0.2.0a1

Alpha testing for 0.2.0.

What's Changed
* Inheriting BaseFOV on ClearControlFOV by JoOkuma in https://github.com/czbiohub-sf/iohub/pull/148
* Universal API implementations for Micro-Manager OME-TIFF and NDTiff by ziw-liu in https://github.com/czbiohub-sf/iohub/pull/185
* Fix bug determining number of rows and cols by ieivanov in https://github.com/czbiohub-sf/iohub/pull/214
* Fix bug reading dragonfly acquisitions by ieivanov in https://github.com/czbiohub-sf/iohub/pull/215
* Sort keys in metadata .json files by ieivanov in https://github.com/czbiohub-sf/iohub/pull/211
* Add CITATION.cff by ziw-liu in https://github.com/czbiohub-sf/iohub/pull/219
* Modify warning by ieivanov in https://github.com/czbiohub-sf/iohub/pull/220
* Add Y5 to orange display color group by ziw-liu in https://github.com/czbiohub-sf/iohub/pull/224
* Fix README examples link by talonchandler in https://github.com/czbiohub-sf/iohub/pull/225
* UAPI docs update by ziw-liu in https://github.com/czbiohub-sf/iohub/pull/223
* Unified API for Micro-manager readers by ieivanov in https://github.com/czbiohub-sf/iohub/pull/222
* Fix docs switcher path by ziw-liu in https://github.com/czbiohub-sf/iohub/pull/227
* Refactor NGFF module and migrate to Pydantic v2 by ziw-liu in https://github.com/czbiohub-sf/iohub/pull/233
* Fixing pyramid scaling factor by JoOkuma in https://github.com/czbiohub-sf/iohub/pull/238
* Use annotation instead of field for tagged union by ziw-liu in https://github.com/czbiohub-sf/iohub/pull/244
* Export `ImageArray` from the `ngff` module by edyoshikun in https://github.com/czbiohub-sf/iohub/pull/245


**Full Changelog**: https://github.com/czbiohub-sf/iohub/compare/v0.1.0...v0.2.0a1

0.1.0

The first stable release of iohub. We only include source code download on GitHub since iohub is pure Python. The wheels are hosted on PyPI.

This release supports API and CLI for the following formats:

**Read**

- OME-Zarr (OME-NGFF v0.4)
- Micro-Manager TIFF sequence, OME-TIFF (MMStack), and NDTiff datasets
- Custom data formats generated by Biohub microscopes
- Falcon (PTI)
- Dorado (ClearControl)
- Dragonfly (OpenCell OME-TIFF)
- Mantis (NDTiff)
- DaXi (OME-TIFF)

**Write**
- OME-Zarr

---
Note: With v0.2.0 we plan to include breaking API changes as proposed in https://github.com/czbiohub-sf/iohub/pull/132.

0.1.0rc0

Release candidate for 0.1.0.

What's Changed
* Support MM 2.0.1 for single page TIFFs by ziw-liu in https://github.com/czbiohub-sf/iohub/pull/179
* Enable XYZ chunking at conversion by ieivanov in https://github.com/czbiohub-sf/iohub/pull/178
* Better NDTiff reading when the first position is missing by ieivanov in https://github.com/czbiohub-sf/iohub/pull/190
* Fix for when ChNames key is not available by JoOkuma in https://github.com/czbiohub-sf/iohub/pull/191
* Added option to not check copied data by JoOkuma in https://github.com/czbiohub-sf/iohub/pull/192
* Fix product integer overflow by JoOkuma in https://github.com/czbiohub-sf/iohub/pull/193
* OpenCell reader extension by ieivanov in https://github.com/czbiohub-sf/iohub/pull/197
* Extend HCS label parsing by ieivanov in https://github.com/czbiohub-sf/iohub/pull/189
* Scaling chunk size according to pyramid factors by JoOkuma in https://github.com/czbiohub-sf/iohub/pull/201
* Modified fluorophore color code by ieivanov in https://github.com/czbiohub-sf/iohub/pull/202
* Update documentation and metadata by ziw-liu in https://github.com/czbiohub-sf/iohub/pull/203
* Save ndtiff image plane metadata per position by ieivanov in https://github.com/czbiohub-sf/iohub/pull/204
* Bump supported Python versions by ziw-liu in https://github.com/czbiohub-sf/iohub/pull/200


**Full Changelog**: https://github.com/czbiohub-sf/iohub/compare/v0.1.0dev5...v0.1.0rc0

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