Itk-elastix

Changes:

* 39e9fe3e6f32a627dc39ce4f4a27065b65efd10c Merge pull request 28 from InsightSoftwareConsortium/wrap-parameter-map-file-name-vector
* df4e240745171693d1459de53a8b13f93db070e0 BUG: Add wrapping for the parameter map filename vector type
* 2b103fab996fe6c23e62488b127cbcd1b6a7e88e Merge pull request 26 from InsightSoftwareConsortium/rm-jupyter-matplotlib
* 8931df6f74332ff3f11d4e4d62ddc61cc0aad040 BUG: Workaround jupyter-matplotlib MyBinder versioning
* f9c45482e5eada0167245b76574323f5f5a8dfaf Merge pull request 25 from InsightSoftwareConsortium/binder-versions
* f26e70c690a7fe4c837cffdeae7ebca5fd9491cb DOC: Use specific matplotlib versions on Binder
* 8c6ae2cd43fdef6336400e3d6689376a5d455d89 Merge pull request 24 from InsightSoftwareConsortium/numpy-array-example
* 41b025ddf3e67fd2a0c2e796943a9e9cf08bf839 DOC: Add NumPy array example
* d32f96ff50a1fbf9c0300dd7df33e64b96fb73ee Merge pull request 23 from InsightSoftwareConsortium/binder-badge
* e52de25cfb4e4808bf77bf3527251cde7db35d73 DOC: Set expectation for Binder 3D registration time
<details><summary><b>See More</b></summary>

* 0a7b109b06aee25c6fba1463985132aeae486585 DOC: Add MyBinder badge
* f90d408307a7c5dc586f6d7a4de9d9e88b85cf0f BUG: Specify Binder itk version
* e3293213707bdab21cc9a3266074a4ceba93d7e4 BUG: Update jupyterlab version in Binder
* c987067c52570ec8f49024e97a8d0e3afed38798 Merge pull request 22 from InsightSoftwareConsortium/zenodo-badge
* 1ed202ca102e44db673f5e9653c172d09ccd45ad DOC: Add Zenodo badge to the README
* eb691d2582e54254eec4bf2641130a46c52b0dbe Merge pull request 21 from InsightSoftwareConsortium/hello-notebook
* 56caa00df6f78870d7fa7c03239d7250c9e50b05 DOC: Add 0_HelloRegistrationWorld notebook
* a62e40666b1e62bd9aacb93613e8b1cd04c80717 ENH: Add configuration for MyBinder

This list of changes was [auto generated](https://dev.azure.com/ITKElastix/680005de-f862-4cd0-8136-c1546b76f85c/_release?releaseId=20&_a=release-summary).</details>

Changes:

* 2b552f708bad97d5d5647fd0c9af1a8612ea6af3 Merge pull request 20 from InsightSoftwareConsortium/itk-package-version
* 71283e5d2b7aa8e64358df342dd1f13e3a5242f7 BUG: Python package depends on itk 5.1rc1
* c2015d5f471720b33b610cad4652bbeeb3bf8093 Merge pull request 19 from InsightSoftwareConsortium/result-primary-output
* 1da371ef0cdcb32970e768b79110cbf7e6317332 BUG: Do not use "ResultImage" for primary output
* 847b8786e7a92a2e773f3d3c7a784f4144d0de0a Merge pull request 17 from InsightSoftwareConsortium/python-version
* 30fd0cf93760df92e40a4ce89b8b88006029c2ca COMP: Add workarounds for ITK 5.1 RC 1 build issues
* 628d2427a1693090f69c22e94d81cb5ebec6f7ee STYLE: Re-enable KWStyle test [ 7 ]
* ed4ba9be3d9454fd722622fcf352a98a7130cad8 Merge pull request 18 from InsightSoftwareConsortium/style-checks
* d39b9a0339ea122ca326c502c3692285c1a11c1f ENH: Add GitHub Actions style checks
* ea41c960158651a1ff10ab54b1d6a35d283433bb STYLE: Apply clang-format
<details><summary><b>See More</b></summary>

* 7e62823ad323cc9be56318e7d132cf67d04224c0 STYLE: Add ITK .clang-format style configuration file
* 72ffb2169f8c38b6523310b0905e1c9db185d5b5 STYLE: Add .gitattributes style attributes
* 031b6cdf217f361178bc960712d2969b44f08d29 ENH: Bump Python package version to 0.5.0
* ed7ef4b4841759dd78393c75cc0335d4c5c2fb53 ENH: Build against ITK 5.1 RC 1

This list of changes was [auto generated](https://dev.azure.com/ITKElastix/680005de-f862-4cd0-8136-c1546b76f85c/_release?releaseId=13&_a=release-summary).</details>

Changes:

* 5783d94e8adbdd9c3e877d230fff2f61ce255960 Merge pull request 16 from InsightSoftwareConsortium/macos-opencl-python-packages
* a43d64ecda299f93b5dc95b6d02c58550aab389c ENH: Build macOS OpenCL wheels
* 5d699a7b5becac18205cdde2e06ad3cc6435289c Merge pull request 15 from InsightSoftwareConsortium/opencl-support
* c094f1f80cc9896afc2553569e225269c0f5fcfd STYLE: Remove commented code
* 0cc73bd1af45712530d6c81de526daec886d27f0 ENH: Add .gitignore
* 97d2a7ea442ba8928c1f619f1674b24c755d6bd9 BUG: Only find OpenCL when ELASTIX_USE_OPENCL is enabled
* ea1aaf5eda4757291c855c0d49e77842a19ba16a ENH: Move dockcross scripts to the wrapping directory
* d01d08d5ec3857aa34146df9c2e751831c5419b3 Merge pull request 14 from InsightSoftwareConsortium/ANN-KNN-metric-optional
* fea4563d00e0babfed05983169500d0c6d5da8ac ENH: Allow setting USE_KNNGraphAlphaMutualInformationMetric
* 1357850a69babdba77f8b7530f5382ed3e020a7d BUG: SetTransformParameterObject with a raw pointer
<details><summary><b>See More</b></summary>

* 8ab4368888add80d4c67eac14741ce4d1296cc78 ENH: Add OpenCL build support
* bd1aa93a92f045f5420d01a5821fef92f8fff440 Merge pull request 13 from InsightSoftwareConsortium/dynamic-work-units
* 4998f1b821e59be0e052d058a85b28455e7bae1b DOC: Add installation and basic usage instructions
* 203d4b6792f35aa5416dc13fa726cdfe13d41f35 ENH: Improve support for dynamic work units

This list of changes was [auto generated](https://dev.azure.com/ITKElastix/680005de-f862-4cd0-8136-c1546b76f85c/_release?releaseId=9&_a=release-summary).</details>

Changes:

* 724322dbb65eb26a5f61ed74a6e28b24be0339ed Merge pull request 12 from InsightSoftwareConsortium/package-version
* 3dcdd0bd3e86f9a19da5a23d9c6457248d3d92c0 ENH: Bump package version to 0.3.0
* f421d63ceb1841131a546922e05ac1a7efe0ddb5 Merge pull request 11 from InsightSoftwareConsortium/python-registration-test
* c9a0bab2f8a5cfd2fdb39b10e8a7637657086192 ENH: Add itkElastixRegistrationMethodTest.py
* 4f23549f76ea09815c2ef0678bfdb95934cf75ea Merge pull request 9 from InsightSoftwareConsortium/windows-warnings
* bccd16df0d6336c38b3bc7aa2bff3eaa24b81fe5 BUG: Ensure we are not using KNN metric for ANN dependency
* 7caa75f6e98e92d234aa740db1d918a785b788ec COMP: Address Windows link errors
* 88c1b189f73b7c578f9a65678393d80190f9d9e8 COMP: Do not create BUILD_SHARED_LIBS option in Elastix
* 651091d8c6f86a09dd581999c7abc3553154a1a8 COMP: Address elastix Windows warnings
* 0d747f3106ec6cd076230d6e4750559290ad3a81 COMP: Do not build elastix with shared libraries
<details><summary><b>See More</b></summary>

* 22af6707fed43463ef87faeb2bcf9741f8830f16 Merge pull request 7 from InsightSoftwareConsortium/kwstyle
* 4115023cc44dedbf64b98a60d64b7ec19a6d6ccd STYLE: Exclude KWStyle test until building against ITK 5.1
* e4da29a9a9d4c205643380566665fc15d322a143 Merge pull request 5 from InsightSoftwareConsortium/knn-graph-alpha
* 1b5577eb5a4c22dd0b52ad99fc12d26c7c5f3523 Merge pull request 6 from InsightSoftwareConsortium/status
* 3cbefcaf066e93265de47eb0366fe71eef43ca24 DOC: Add Azure status badge
* 26a358ccfbb2ccfdcd968569d929286617493a66 ENH: Disable KNNGraphAlphaMutualInformationMetric
* 73b1b3aa505ebe13f3b4ded891ba13aab22316d0 Merge pull request 4 from InsightSoftwareConsortium/pre-deps
* daa5d2dcf261b9d668836b21771e23df71df06a1 BUG:; Depend on released version of ITK for pip
* ce61dd34e5dc1e5d9c48db4627799ff057e6d23a Merge pull request 3 from InsightSoftwareConsortium/wrap-real
* 4fd3b6e79f668622a7d6a530d8a8e5bbe309e275 BUG: Only wrap for real pixel types
* 1dce68fbddda1d02298ad9336156b364dd1bd416 Merge pull request 2 from InsightSoftwareConsortium/itk-5.1b01
* ea53c8b06b4862ced08a22819427164f4463eb9c DOC: Add work in progress note
* 6ed7dd726773c00a5929c778dd1b974f4d032eb6 BUG: Do not set FixedImage as PrimaryInput and RequiredInput
* 720b13814c8da84cf63f739deaa3eec46a6553c6 DOC: Document NumPy array support
* 933b9fa43a8df9d1608642db9c2077d934a02bd2 ENH: Build against ITK v5.1b01
* c977c6e928474bac7d65be8613e0ed69af9afd8a Merge pull request 1 from InsightSoftwareConsortium/python-package-installation
* 15018bdabfdb031a4006d12e82b9a703e9c5aa01 BUG: Do not build ANNlib as shared
* 985e5cb00a4813d7008f2f1c0efe7e6389c7d6c0 ENH: Do not build elastix tests
* f52baa9b1b303fb9f78ce667b50cb6944bfb951f COMP: Set CMAKE_POSITION_INDEPENDENT_CODE ON
* 14b44c6c2356ade5b97fc278b3d83be1cb225c2a COMP: Do not use OpenMP with GCC 4.8
* 9b1d687a5e254c22eca1a30ecb14bf9cdf9e1a51 COMP: macOS Clang invalid binary operands to expression
* bab469d88034faef4df3b5079f6a70bf3f6e92b1 COMP: Add OpenMP flags
* 245682503c19001780709b54496698939dd4081a COMP: Add missing typeinfo include
* ae3e2b30c7931cc8c4352cd04e12091514a92359 COMP: Add header for std::pow
* aeb32eedb127dc47771cd1df9781f567999645dd DOC: Add installation and basic usage instructions
* 9e9be09cbe03a60d3eb12f8e762d1c2a9c57083a DOC: Add Acknowledgements section to README
* 0cd4b7c8a018ccc82988edb41714ab4dd96c65bd ENH: Add wrapping for elastix::ParameterObject
* 442cd1639f3edd7482baea803d61c357c75923fa ENH: Add wrapping for TransformixFilter
* c88e40e31aa48c8eb3b809fe16b7dc885f05b01c COMP: Address GetInput calls for wrapping
* 0480e0b8511c4c12ab1a5caaf7da56087c51bc3d ENH: Add test data content links
* 049f9028cb5107d8786fd9c5395b8db1e020888d ENH: Add a few parameter files for testing
* 4ca959b5da656a674ea660d91b4689cc6639d606 STYLE: Rename ElastixFilter to ElastixRegistrationMethod
* 24e78af35ea433aabea45920046a19b00b59bdfe ENH: Add testing for indexed inputs
* 9613d1bee149b87e6f4a5181749d511881442863 ENH: Add SetInput methods to ElastixFilter
* 171b2401d6062af3aeda9a24e150c9b2a9bd2bee ENH: Add ElastixFilter GetInput
* 9aa4f0d018a48a1738d6ff3b21750713fba50e51 STYLE: TransformixFilter style updates
* 3be8a83f8c49cfa866022412720bd4ddf22cd64a STYLE: Remove redundant comments
* d34b65b384a38161897afc1f44f92a1e7909617b BUG: Fix use of smart pointers in API for Python wrapping
* eb081ca6fba59b84d8ae600da06d7ab99217b5d3 ENH: Pass test input / output filepaths
* 66255dfc46db3a9cf791e157a5e69a0e4698a419 BUG: Address ElastixInDoxygenGroup test
* 3b82db415bf05ec99c6d5681fcce1f54fa1e70e7 STYLE: Address KWStyle test issues
* cf11af74e9eae4fed1f5812641c87dacffc15ec2 ENH: Bulid an ElastixTestDriver
* c46dbe5fc9a97a7a17c49474aaa7242d5bf4d8cc ENH: Remove MinimalStandardRandomVariateGenerator class from template
* 8dd644032e70d12e67b684231230176e6ed36e3f ENH: Download and build elastix

This list of changes was [auto generated](https://dev.azure.com/ITKElastix/680005de-f862-4cd0-8136-c1546b76f85c/_release?releaseId=4&_a=release-summary).</details>

latest


Changes:

* 97c9c6e1e858969b449034a48ff8bb7a57987ecd Merge pull request 33 from InsightSoftwareConsortium/parameterobject-getclassname
* 56c65e79533704289dd85309690d489dd0636be5 BUG: Fix .GetClassName() for ParameterObject
* 4ecc909c72e7e40e35fe3d27577e3e61a8fdf71f BUG: Update Python test for indexed transform output
* 5f655ce5caa97a642c5d3250f120ed1880003c98 Merge pull request 32 from InsightSoftwareConsortium/transform-output-index
* 7a46edfa2296f2b594e6471eb8ec1454d47d9410 Merge 1ba2b52ceb30b6d410f07370003a62f53e284d46 into 72b3de1f4a6c405a9b702b4b36ad2d0cf00e5f44
* fb42536a4bce42a0d977984ce44bdef644502600 ENH: Make TransformParameterObject an indexed output
* 72b3de1f4a6c405a9b702b4b36ad2d0cf00e5f44 Merge pull request 31 from InsightSoftwareConsortium/mask-notebook
* 043a7f03b72c060c2d050af90ac4ad547aa7fba7 DOC: Add Masks notebook
* 071a11013f27c2e6c3dc543b320901f86ccd9fd0 Merge pull request 30 from InsightSoftwareConsortium/doc-opencl
* 34616b206d4d4b472a0cec09b2914d790cb55bfd DOC: Add notebook links to the README
<details><summary><b>See More</b></summary>

* 732b516599263b890df8aa55c018dc66c4527713 Merge pull request 27 from InsightSoftwareConsortium/registration-parameters-notebook
* 8987e97c85983a2c99947b85b1e79301d38e0185 DOC: Link to elastix manual and elastix parameter file database
* c3520b7381de19f16449abe624f14b47654cdabc DOC: Use compare widget in notebooks
* b44ffc054d4a8ec6c75f63c0c660d02f82ceba45 DOC: Notebook content for serializing ParameterObject's
* af693a2f35f8490e90c816156e01282ea192fefd DOC: Require itkwidgets>=0.25.1
* 0e5a95435a7d0021098f1b923d30e283300d290b DOC: Require itk-elastix>=0.5.1 on Binder
* 712b3797f3d7e1e866b84c663fe94a0fdc61282e DOC: Add registration parameters notebook
* c37fa859f5d641e7f287af0958ca18e9fe578d8a Merge pull request 29 from InsightSoftwareConsortium/ipympl-0.4.1
* 944aa406a013b6032f13e0684e829bbc86eb1df3 BUG: Require ipympl-0.4.1 in MyBinder build [ matplotlib/jupyter-matplotlib163 ]

This list of changes was [auto generated](https://dev.azure.com/ITKElastix/680005de-f862-4cd0-8136-c1546b76f85c/_release?releaseId=22&_a=release-summary).</details>